Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06020

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06010 and BWI76_RS06015 are separated by 46 nucleotidesBWI76_RS06015 and BWI76_RS06020 are separated by 76 nucleotidesBWI76_RS06020 and BWI76_RS06025 are separated by 229 nucleotides BWI76_RS06010: BWI76_RS06010 - ethanolamine permease, at 1,261,137 to 1,262,516 _RS06010 BWI76_RS06015: BWI76_RS06015 - hypothetical protein, at 1,262,563 to 1,262,748 _RS06015 BWI76_RS06020: BWI76_RS06020 - glycoside hydrolase, at 1,262,825 to 1,264,207 _RS06020 BWI76_RS06025: BWI76_RS06025 - amino acid transporter, at 1,264,437 to 1,265,843 _RS06025 Position (kb) 1262 1263 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2at 1261.860 kb on - strand, within BWI76_RS06010at 1261.877 kb on - strand, within BWI76_RS06010at 1261.916 kb on + strand, within BWI76_RS06010at 1262.066 kb on + strand, within BWI76_RS06010at 1262.074 kb on - strand, within BWI76_RS06010at 1262.074 kb on - strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.261 kb on + strand, within BWI76_RS06010at 1262.549 kb on - strandat 1262.643 kb on + strand, within BWI76_RS06015at 1262.646 kb on - strand, within BWI76_RS06015at 1262.749 kb on - strandat 1262.788 kb on - strandat 1262.790 kb on + strandat 1262.871 kb on + strandat 1262.926 kb on + strandat 1262.945 kb on - strandat 1263.051 kb on + strand, within BWI76_RS06020at 1263.088 kb on + strand, within BWI76_RS06020at 1263.127 kb on + strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.135 kb on - strand, within BWI76_RS06020at 1263.183 kb on + strand, within BWI76_RS06020at 1263.376 kb on + strand, within BWI76_RS06020at 1263.397 kb on - strand, within BWI76_RS06020at 1263.408 kb on + strand, within BWI76_RS06020at 1263.534 kb on - strand, within BWI76_RS06020at 1263.646 kb on - strand, within BWI76_RS06020at 1263.810 kb on + strand, within BWI76_RS06020at 1263.905 kb on + strand, within BWI76_RS06020at 1264.012 kb on - strand, within BWI76_RS06020at 1264.538 kb on - strandat 1264.592 kb on - strand, within BWI76_RS06025at 1264.658 kb on + strand, within BWI76_RS06025at 1264.696 kb on + strand, within BWI76_RS06025at 1264.722 kb on - strand, within BWI76_RS06025at 1264.823 kb on + strand, within BWI76_RS06025at 1264.824 kb on - strand, within BWI76_RS06025at 1264.883 kb on + strand, within BWI76_RS06025at 1264.920 kb on + strand, within BWI76_RS06025at 1264.952 kb on - strand, within BWI76_RS06025

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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1,261,860 - BWI76_RS06010 0.52 +1.5
1,261,877 - BWI76_RS06010 0.54 +0.2
1,261,916 + BWI76_RS06010 0.56 +0.9
1,262,066 + BWI76_RS06010 0.67 -0.1
1,262,074 - BWI76_RS06010 0.68 -1.3
1,262,074 - BWI76_RS06010 0.68 +0.7
1,262,261 + BWI76_RS06010 0.81 +0.6
1,262,261 + BWI76_RS06010 0.81 -0.6
1,262,261 + BWI76_RS06010 0.81 -0.2
1,262,549 - +0.3
1,262,643 + BWI76_RS06015 0.43 +0.7
1,262,646 - BWI76_RS06015 0.45 +0.3
1,262,749 - +1.5
1,262,788 - +0.6
1,262,790 + +0.0
1,262,871 + +0.1
1,262,926 + +0.2
1,262,945 - +1.0
1,263,051 + BWI76_RS06020 0.16 +0.0
1,263,088 + BWI76_RS06020 0.19 -0.4
1,263,127 + BWI76_RS06020 0.22 -1.2
1,263,135 - BWI76_RS06020 0.22 +0.7
1,263,135 - BWI76_RS06020 0.22 -0.8
1,263,135 - BWI76_RS06020 0.22 -2.0
1,263,183 + BWI76_RS06020 0.26 -1.0
1,263,376 + BWI76_RS06020 0.40 +0.1
1,263,397 - BWI76_RS06020 0.41 +0.2
1,263,408 + BWI76_RS06020 0.42 +2.7
1,263,534 - BWI76_RS06020 0.51 -0.2
1,263,646 - BWI76_RS06020 0.59 -1.1
1,263,810 + BWI76_RS06020 0.71 -0.2
1,263,905 + BWI76_RS06020 0.78 +1.2
1,264,012 - BWI76_RS06020 0.86 -0.2
1,264,538 - -1.1
1,264,592 - BWI76_RS06025 0.11 -0.5
1,264,658 + BWI76_RS06025 0.16 -0.5
1,264,696 + BWI76_RS06025 0.18 +0.5
1,264,722 - BWI76_RS06025 0.20 +2.3
1,264,823 + BWI76_RS06025 0.27 +0.8
1,264,824 - BWI76_RS06025 0.28 +1.4
1,264,883 + BWI76_RS06025 0.32 +0.8
1,264,920 + BWI76_RS06025 0.34 +0.8
1,264,952 - BWI76_RS06025 0.37 -0.3

Or see this region's nucleotide sequence