Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05645

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05640 and BWI76_RS05645 are separated by 136 nucleotidesBWI76_RS05645 and BWI76_RS05650 are separated by 76 nucleotides BWI76_RS05640: BWI76_RS05640 - GntR family transcriptional regulator, at 1,183,930 to 1,184,706 _RS05640 BWI76_RS05645: BWI76_RS05645 - fructuronate reductase, at 1,184,843 to 1,186,318 _RS05645 BWI76_RS05650: BWI76_RS05650 - mannonate dehydratase, at 1,186,395 to 1,187,579 _RS05650 Position (kb) 1184 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1at 1184.124 kb on - strand, within BWI76_RS05640at 1184.124 kb on - strand, within BWI76_RS05640at 1184.205 kb on + strand, within BWI76_RS05640at 1185.229 kb on + strand, within BWI76_RS05645at 1185.264 kb on + strand, within BWI76_RS05645at 1185.272 kb on - strand, within BWI76_RS05645at 1185.719 kb on - strand, within BWI76_RS05645at 1185.821 kb on + strand, within BWI76_RS05645at 1185.829 kb on - strand, within BWI76_RS05645at 1186.333 kb on - strandat 1186.673 kb on + strand, within BWI76_RS05650at 1186.681 kb on - strand, within BWI76_RS05650at 1186.691 kb on - strand, within BWI76_RS05650at 1186.701 kb on - strand, within BWI76_RS05650at 1186.772 kb on + strand, within BWI76_RS05650at 1187.019 kb on + strand, within BWI76_RS05650at 1187.022 kb on - strand, within BWI76_RS05650at 1187.044 kb on + strand, within BWI76_RS05650at 1187.168 kb on + strand, within BWI76_RS05650at 1187.204 kb on + strand, within BWI76_RS05650at 1187.214 kb on - strand, within BWI76_RS05650at 1187.290 kb on + strand, within BWI76_RS05650at 1187.304 kb on - strand, within BWI76_RS05650

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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1,184,124 - BWI76_RS05640 0.25 +1.5
1,184,124 - BWI76_RS05640 0.25 +0.2
1,184,205 + BWI76_RS05640 0.35 +0.2
1,185,229 + BWI76_RS05645 0.26 -1.3
1,185,264 + BWI76_RS05645 0.29 -1.6
1,185,272 - BWI76_RS05645 0.29 -0.1
1,185,719 - BWI76_RS05645 0.59 +0.6
1,185,821 + BWI76_RS05645 0.66 -0.4
1,185,829 - BWI76_RS05645 0.67 -0.3
1,186,333 - -0.2
1,186,673 + BWI76_RS05650 0.23 +0.9
1,186,681 - BWI76_RS05650 0.24 -0.0
1,186,691 - BWI76_RS05650 0.25 -0.9
1,186,701 - BWI76_RS05650 0.26 +0.7
1,186,772 + BWI76_RS05650 0.32 +0.4
1,187,019 + BWI76_RS05650 0.53 +0.4
1,187,022 - BWI76_RS05650 0.53 -1.0
1,187,044 + BWI76_RS05650 0.55 -0.4
1,187,168 + BWI76_RS05650 0.65 +0.8
1,187,204 + BWI76_RS05650 0.68 -1.8
1,187,214 - BWI76_RS05650 0.69 +0.7
1,187,290 + BWI76_RS05650 0.76 -1.9
1,187,304 - BWI76_RS05650 0.77 -2.7

Or see this region's nucleotide sequence