Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04855 and BWI76_RS04860 are separated by 31 nucleotides BWI76_RS04860 and BWI76_RS04865 overlap by 1 nucleotides BWI76_RS04865 and BWI76_RS04870 are separated by 176 nucleotides
BWI76_RS04855: BWI76_RS04855 - regulatory protein AmpE, at 1,013,665 to 1,014,519
_RS04855
BWI76_RS04860: BWI76_RS04860 - alpha-N-arabinofuranosidase, at 1,014,551 to 1,015,501
_RS04860
BWI76_RS04865: BWI76_RS04865 - MFS transporter, at 1,015,501 to 1,016,907
_RS04865
BWI76_RS04870: BWI76_RS04870 - aromatic amino acid transporter AroP, at 1,017,084 to 1,018,451
_RS04870
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1014.681 kb on + strand, within BWI76_RS04860 at 1014.735 kb on + strand, within BWI76_RS04860 at 1014.748 kb on - strand, within BWI76_RS04860 at 1014.824 kb on - strand, within BWI76_RS04860 at 1014.841 kb on - strand, within BWI76_RS04860 at 1015.293 kb on - strand, within BWI76_RS04860 at 1015.293 kb on - strand, within BWI76_RS04860 at 1015.366 kb on + strand, within BWI76_RS04860 at 1015.374 kb on - strand, within BWI76_RS04860 at 1015.400 kb on + strand, within BWI76_RS04860 at 1015.493 kb on + strand at 1015.562 kb on - strand at 1015.683 kb on + strand, within BWI76_RS04865 at 1015.683 kb on - strand, within BWI76_RS04865 at 1015.885 kb on + strand, within BWI76_RS04865 at 1015.893 kb on - strand at 1015.893 kb on - strand, within BWI76_RS04865 at 1015.893 kb on - strand, within BWI76_RS04865 at 1015.893 kb on - strand, within BWI76_RS04865 at 1016.033 kb on - strand, within BWI76_RS04865 at 1016.093 kb on - strand, within BWI76_RS04865 at 1016.093 kb on - strand, within BWI76_RS04865 at 1016.132 kb on + strand, within BWI76_RS04865 at 1016.149 kb on - strand, within BWI76_RS04865 at 1016.274 kb on - strand at 1016.367 kb on - strand, within BWI76_RS04865 at 1016.380 kb on - strand, within BWI76_RS04865 at 1016.535 kb on + strand, within BWI76_RS04865 at 1016.545 kb on - strand, within BWI76_RS04865 at 1016.612 kb on + strand, within BWI76_RS04865 at 1016.617 kb on + strand, within BWI76_RS04865 at 1016.632 kb on - strand, within BWI76_RS04865 at 1016.632 kb on - strand, within BWI76_RS04865 at 1016.754 kb on + strand, within BWI76_RS04865 at 1016.755 kb on + strand, within BWI76_RS04865 at 1016.757 kb on + strand, within BWI76_RS04865 at 1016.986 kb on - strand at 1017.187 kb on - strand at 1017.428 kb on + strand, within BWI76_RS04870 at 1017.429 kb on - strand, within BWI76_RS04870 at 1017.524 kb on + strand, within BWI76_RS04870 at 1017.524 kb on + strand, within BWI76_RS04870 at 1017.532 kb on - strand, within BWI76_RS04870 at 1017.560 kb on - strand, within BWI76_RS04870 at 1017.588 kb on + strand, within BWI76_RS04870 at 1017.808 kb on - strand, within BWI76_RS04870 at 1017.808 kb on - strand, within BWI76_RS04870 at 1017.837 kb on + strand, within BWI76_RS04870 at 1017.837 kb on + strand, within BWI76_RS04870
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 1,014,681 + BWI76_RS04860 0.14 +1.9 1,014,735 + BWI76_RS04860 0.19 +0.1 1,014,748 - BWI76_RS04860 0.21 -2.7 1,014,824 - BWI76_RS04860 0.29 +0.5 1,014,841 - BWI76_RS04860 0.30 +0.2 1,015,293 - BWI76_RS04860 0.78 -0.0 1,015,293 - BWI76_RS04860 0.78 -2.5 1,015,366 + BWI76_RS04860 0.86 -0.5 1,015,374 - BWI76_RS04860 0.87 -0.4 1,015,400 + BWI76_RS04860 0.89 +2.9 1,015,493 + +1.5 1,015,562 - +2.5 1,015,683 + BWI76_RS04865 0.13 -0.4 1,015,683 - BWI76_RS04865 0.13 +0.2 1,015,885 + BWI76_RS04865 0.27 -1.3 1,015,893 - +0.6 1,015,893 - BWI76_RS04865 0.28 +0.1 1,015,893 - BWI76_RS04865 0.28 +1.0 1,015,893 - BWI76_RS04865 0.28 -0.6 1,016,033 - BWI76_RS04865 0.38 -2.0 1,016,093 - BWI76_RS04865 0.42 -0.5 1,016,093 - BWI76_RS04865 0.42 +0.2 1,016,132 + BWI76_RS04865 0.45 +0.8 1,016,149 - BWI76_RS04865 0.46 +0.7 1,016,274 - -0.1 1,016,367 - BWI76_RS04865 0.62 +0.2 1,016,380 - BWI76_RS04865 0.62 -0.2 1,016,535 + BWI76_RS04865 0.73 -0.2 1,016,545 - BWI76_RS04865 0.74 +0.3 1,016,612 + BWI76_RS04865 0.79 +0.6 1,016,617 + BWI76_RS04865 0.79 +0.4 1,016,632 - BWI76_RS04865 0.80 +0.5 1,016,632 - BWI76_RS04865 0.80 -0.8 1,016,754 + BWI76_RS04865 0.89 -1.4 1,016,755 + BWI76_RS04865 0.89 -0.3 1,016,757 + BWI76_RS04865 0.89 +1.9 1,016,986 - -1.3 1,017,187 - -0.4 1,017,428 + BWI76_RS04870 0.25 +0.0 1,017,429 - BWI76_RS04870 0.25 -2.2 1,017,524 + BWI76_RS04870 0.32 -0.9 1,017,524 + BWI76_RS04870 0.32 +0.1 1,017,532 - BWI76_RS04870 0.33 -0.5 1,017,560 - BWI76_RS04870 0.35 +0.3 1,017,588 + BWI76_RS04870 0.37 -1.7 1,017,808 - BWI76_RS04870 0.53 -1.2 1,017,808 - BWI76_RS04870 0.53 -1.6 1,017,837 + BWI76_RS04870 0.55 -0.8 1,017,837 + BWI76_RS04870 0.55 -0.1
Or see this region's nucleotide sequence