Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04085

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04080 and BWI76_RS04085 are separated by 158 nucleotidesBWI76_RS04085 and BWI76_RS04090 overlap by 32 nucleotidesBWI76_RS04090 and BWI76_RS04095 are separated by 14 nucleotides BWI76_RS04080: BWI76_RS04080 - 16S rRNA (guanine(1207)-N(2))-methyltransferase, at 840,258 to 841,286 _RS04080 BWI76_RS04085: BWI76_RS04085 - DNA polymerase III subunit psi, at 841,445 to 841,858 _RS04085 BWI76_RS04090: BWI76_RS04090 - ribosomal-protein-alanine N-acetyltransferase RimI, at 841,827 to 842,273 _RS04090 BWI76_RS04095: BWI76_RS04095 - dUMP phosphatase, at 842,288 to 842,965 _RS04095 Position (kb) 841 842Strain fitness (log2 ratio) -2 -1 0 1 2at 840.764 kb on - strand, within BWI76_RS04080at 840.808 kb on + strand, within BWI76_RS04080at 840.808 kb on + strand, within BWI76_RS04080at 840.816 kb on - strand, within BWI76_RS04080at 840.816 kb on - strand, within BWI76_RS04080at 840.863 kb on + strand, within BWI76_RS04080at 840.930 kb on + strand, within BWI76_RS04080at 840.933 kb on - strand, within BWI76_RS04080at 840.938 kb on - strand, within BWI76_RS04080at 840.966 kb on + strand, within BWI76_RS04080at 841.008 kb on + strand, within BWI76_RS04080at 841.021 kb on + strand, within BWI76_RS04080at 841.124 kb on + strand, within BWI76_RS04080at 841.173 kb on + strand, within BWI76_RS04080at 841.271 kb on + strandat 841.857 kb on + strandat 841.983 kb on + strand, within BWI76_RS04090at 842.066 kb on + strand, within BWI76_RS04090at 842.076 kb on - strand, within BWI76_RS04090at 842.128 kb on + strand, within BWI76_RS04090at 842.143 kb on + strand, within BWI76_RS04090at 842.730 kb on - strand, within BWI76_RS04095

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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840,764 - BWI76_RS04080 0.49 +1.0
840,808 + BWI76_RS04080 0.53 +1.4
840,808 + BWI76_RS04080 0.53 +1.3
840,816 - BWI76_RS04080 0.54 +0.5
840,816 - BWI76_RS04080 0.54 +1.0
840,863 + BWI76_RS04080 0.59 +1.7
840,930 + BWI76_RS04080 0.65 +1.7
840,933 - BWI76_RS04080 0.66 +1.2
840,938 - BWI76_RS04080 0.66 +0.7
840,966 + BWI76_RS04080 0.69 +2.4
841,008 + BWI76_RS04080 0.73 +0.6
841,021 + BWI76_RS04080 0.74 +2.7
841,124 + BWI76_RS04080 0.84 +0.3
841,173 + BWI76_RS04080 0.89 +1.6
841,271 + +0.7
841,857 + -2.1
841,983 + BWI76_RS04090 0.35 -1.1
842,066 + BWI76_RS04090 0.53 -1.8
842,076 - BWI76_RS04090 0.56 -1.8
842,128 + BWI76_RS04090 0.67 -1.1
842,143 + BWI76_RS04090 0.71 -0.8
842,730 - BWI76_RS04095 0.65 -0.2

Or see this region's nucleotide sequence