Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03995 and BWI76_RS04000 are separated by 65 nucleotides BWI76_RS04000 and BWI76_RS04005 are separated by 2 nucleotides BWI76_RS04005 and BWI76_RS04010 are separated by 108 nucleotides BWI76_RS04010 and BWI76_RS04015 overlap by 10 nucleotides
BWI76_RS03995: BWI76_RS03995 - hypothetical protein, at 827,919 to 828,413
_RS03995
BWI76_RS04000: BWI76_RS04000 - DNA replication protein DnaC, at 828,479 to 829,216
_RS04000
BWI76_RS04005: BWI76_RS04005 - primosomal protein DnaI, at 829,219 to 829,758
_RS04005
BWI76_RS04010: BWI76_RS04010 - hypothetical protein, at 829,867 to 830,340
_RS04010
BWI76_RS04015: BWI76_RS04015 - membrane protein, at 830,331 to 831,107
_RS04015
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 828.222 kb on - strand, within BWI76_RS03995 at 828.337 kb on + strand, within BWI76_RS03995 at 829.789 kb on - strand at 829.807 kb on - strand at 829.888 kb on - strand at 829.991 kb on - strand, within BWI76_RS04010 at 830.052 kb on + strand, within BWI76_RS04010 at 830.106 kb on - strand, within BWI76_RS04010 at 830.152 kb on - strand, within BWI76_RS04010 at 830.228 kb on + strand, within BWI76_RS04010 at 830.236 kb on - strand, within BWI76_RS04010 at 830.297 kb on + strand at 830.297 kb on + strand at 830.305 kb on - strand at 830.305 kb on - strand at 830.383 kb on - strand at 830.566 kb on - strand, within BWI76_RS04015 at 830.566 kb on - strand, within BWI76_RS04015 at 830.625 kb on + strand, within BWI76_RS04015
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 828,222 - BWI76_RS03995 0.61 +0.3 828,337 + BWI76_RS03995 0.84 -0.6 829,789 - +0.1 829,807 - +1.1 829,888 - -1.3 829,991 - BWI76_RS04010 0.26 -1.9 830,052 + BWI76_RS04010 0.39 +1.2 830,106 - BWI76_RS04010 0.50 -0.5 830,152 - BWI76_RS04010 0.60 -1.1 830,228 + BWI76_RS04010 0.76 +0.4 830,236 - BWI76_RS04010 0.78 -0.0 830,297 + +0.1 830,297 + -0.0 830,305 - -1.3 830,305 - -0.3 830,383 - -2.2 830,566 - BWI76_RS04015 0.30 +0.2 830,566 - BWI76_RS04015 0.30 +0.4 830,625 + BWI76_RS04015 0.38 -1.8
Or see this region's nucleotide sequence