Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03940 and BWI76_RS03945 are separated by 11 nucleotides BWI76_RS03945 and BWI76_RS03950 are separated by 136 nucleotides
BWI76_RS03940: BWI76_RS03940 - alcohol dehydrogenase, at 814,109 to 815,131
_RS03940
BWI76_RS03945: BWI76_RS03945 - altronate oxidoreductase, at 815,143 to 816,588
_RS03945
BWI76_RS03950: BWI76_RS03950 - sigma-54 interacting domain-containing protein, at 816,725 to 819,490
_RS03950
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 814.243 kb on + strand, within BWI76_RS03940 at 814.245 kb on + strand, within BWI76_RS03940 at 814.263 kb on - strand at 814.265 kb on + strand, within BWI76_RS03940 at 814.308 kb on + strand, within BWI76_RS03940 at 814.356 kb on + strand, within BWI76_RS03940 at 814.361 kb on + strand, within BWI76_RS03940 at 814.369 kb on - strand at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.392 kb on - strand, within BWI76_RS03940 at 814.398 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.401 kb on + strand, within BWI76_RS03940 at 814.409 kb on - strand, within BWI76_RS03940 at 814.472 kb on - strand, within BWI76_RS03940 at 814.540 kb on + strand, within BWI76_RS03940 at 814.549 kb on - strand, within BWI76_RS03940 at 814.630 kb on - strand, within BWI76_RS03940 at 814.640 kb on - strand, within BWI76_RS03940 at 814.692 kb on + strand, within BWI76_RS03940 at 814.700 kb on - strand, within BWI76_RS03940 at 814.702 kb on + strand, within BWI76_RS03940 at 814.737 kb on + strand, within BWI76_RS03940 at 814.745 kb on - strand, within BWI76_RS03940 at 814.781 kb on + strand, within BWI76_RS03940 at 814.835 kb on + strand, within BWI76_RS03940 at 814.894 kb on + strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 815.012 kb on + strand, within BWI76_RS03940 at 815.028 kb on + strand, within BWI76_RS03940 at 815.205 kb on - strand at 815.214 kb on - strand at 815.332 kb on + strand, within BWI76_RS03945 at 815.456 kb on + strand, within BWI76_RS03945 at 815.464 kb on - strand, within BWI76_RS03945 at 815.692 kb on + strand, within BWI76_RS03945 at 815.728 kb on + strand, within BWI76_RS03945 at 815.751 kb on - strand, within BWI76_RS03945 at 815.835 kb on + strand, within BWI76_RS03945 at 816.026 kb on - strand, within BWI76_RS03945 at 816.298 kb on - strand, within BWI76_RS03945 at 816.414 kb on - strand, within BWI76_RS03945 at 816.427 kb on + strand, within BWI76_RS03945 at 816.444 kb on + strand at 816.910 kb on + strand at 816.976 kb on - strand at 817.081 kb on + strand, within BWI76_RS03950 at 817.081 kb on + strand, within BWI76_RS03950 at 817.081 kb on + strand, within BWI76_RS03950 at 817.104 kb on - strand, within BWI76_RS03950 at 817.104 kb on - strand, within BWI76_RS03950 at 817.262 kb on - strand, within BWI76_RS03950 at 817.274 kb on + strand, within BWI76_RS03950 at 817.389 kb on + strand, within BWI76_RS03950 at 817.492 kb on - strand, within BWI76_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 814,243 + BWI76_RS03940 0.13 -0.7 814,245 + BWI76_RS03940 0.13 -2.3 814,263 - +0.6 814,265 + BWI76_RS03940 0.15 +1.3 814,308 + BWI76_RS03940 0.19 -2.9 814,356 + BWI76_RS03940 0.24 +0.5 814,361 + BWI76_RS03940 0.25 +0.0 814,369 - -0.9 814,391 + BWI76_RS03940 0.28 -2.9 814,391 + BWI76_RS03940 0.28 +0.2 814,391 + BWI76_RS03940 0.28 -0.1 814,392 - BWI76_RS03940 0.28 -0.5 814,398 - BWI76_RS03940 0.28 -0.1 814,399 - BWI76_RS03940 0.28 +0.7 814,399 - BWI76_RS03940 0.28 -1.9 814,399 - BWI76_RS03940 0.28 +1.9 814,399 - BWI76_RS03940 0.28 -0.3 814,399 - BWI76_RS03940 0.28 +0.5 814,399 - BWI76_RS03940 0.28 -2.1 814,401 + BWI76_RS03940 0.29 -2.2 814,409 - BWI76_RS03940 0.29 -0.4 814,472 - BWI76_RS03940 0.35 +0.3 814,540 + BWI76_RS03940 0.42 -0.9 814,549 - BWI76_RS03940 0.43 +0.3 814,630 - BWI76_RS03940 0.51 +0.6 814,640 - BWI76_RS03940 0.52 +0.6 814,692 + BWI76_RS03940 0.57 -0.3 814,700 - BWI76_RS03940 0.58 +0.3 814,702 + BWI76_RS03940 0.58 -1.2 814,737 + BWI76_RS03940 0.61 -2.2 814,745 - BWI76_RS03940 0.62 -0.9 814,781 + BWI76_RS03940 0.66 -2.0 814,835 + BWI76_RS03940 0.71 +0.9 814,894 + BWI76_RS03940 0.77 -0.0 814,902 - BWI76_RS03940 0.78 -1.7 814,902 - BWI76_RS03940 0.78 -1.1 814,902 - BWI76_RS03940 0.78 -1.3 815,012 + BWI76_RS03940 0.88 +1.0 815,028 + BWI76_RS03940 0.90 -1.4 815,205 - +1.4 815,214 - -1.9 815,332 + BWI76_RS03945 0.13 -1.3 815,456 + BWI76_RS03945 0.22 -0.2 815,464 - BWI76_RS03945 0.22 -0.0 815,692 + BWI76_RS03945 0.38 +0.4 815,728 + BWI76_RS03945 0.40 -0.5 815,751 - BWI76_RS03945 0.42 +1.1 815,835 + BWI76_RS03945 0.48 +0.1 816,026 - BWI76_RS03945 0.61 +0.6 816,298 - BWI76_RS03945 0.80 +1.1 816,414 - BWI76_RS03945 0.88 +0.6 816,427 + BWI76_RS03945 0.89 +0.1 816,444 + +0.6 816,910 + +0.2 816,976 - -0.6 817,081 + BWI76_RS03950 0.13 +2.3 817,081 + BWI76_RS03950 0.13 -0.1 817,081 + BWI76_RS03950 0.13 -0.4 817,104 - BWI76_RS03950 0.14 -0.6 817,104 - BWI76_RS03950 0.14 -0.6 817,262 - BWI76_RS03950 0.19 +1.1 817,274 + BWI76_RS03950 0.20 -0.5 817,389 + BWI76_RS03950 0.24 -0.3 817,492 - BWI76_RS03950 0.28 -0.2
Or see this region's nucleotide sequence