Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02830

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02820 and BWI76_RS02825 are separated by 64 nucleotidesBWI76_RS02825 and BWI76_RS02830 are separated by 162 nucleotidesBWI76_RS02830 and BWI76_RS02835 are separated by 327 nucleotides BWI76_RS02820: BWI76_RS02820 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 576,022 to 577,395 _RS02820 BWI76_RS02825: BWI76_RS02825 - putative acyltransferase domain protein, at 577,460 to 578,005 _RS02825 BWI76_RS02830: BWI76_RS02830 - DUF4432 domain-containing protein, at 578,168 to 579,376 _RS02830 BWI76_RS02835: BWI76_RS02835 - iron-containing alcohol dehydrogenase, at 579,704 to 580,846 _RS02835 Position (kb) 578 579 580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 577.269 kb on + strandat 577.396 kb on + strandat 577.522 kb on + strand, within BWI76_RS02825at 577.528 kb on - strand, within BWI76_RS02825at 577.552 kb on + strand, within BWI76_RS02825at 577.560 kb on - strand, within BWI76_RS02825at 577.634 kb on + strand, within BWI76_RS02825at 577.911 kb on + strand, within BWI76_RS02825at 578.213 kb on + strandat 578.264 kb on + strandat 578.272 kb on + strandat 578.272 kb on - strandat 578.277 kb on - strandat 578.282 kb on - strandat 578.307 kb on + strand, within BWI76_RS02830at 578.358 kb on - strand, within BWI76_RS02830at 578.425 kb on + strand, within BWI76_RS02830at 578.623 kb on + strand, within BWI76_RS02830at 578.732 kb on + strand, within BWI76_RS02830at 578.920 kb on + strand, within BWI76_RS02830at 578.920 kb on + strand, within BWI76_RS02830at 578.921 kb on + strand, within BWI76_RS02830at 578.922 kb on + strand, within BWI76_RS02830at 578.930 kb on - strand, within BWI76_RS02830at 578.930 kb on - strand, within BWI76_RS02830at 578.930 kb on - strand, within BWI76_RS02830at 578.930 kb on - strand, within BWI76_RS02830at 579.006 kb on - strand, within BWI76_RS02830at 579.079 kb on - strand, within BWI76_RS02830at 579.110 kb on - strand, within BWI76_RS02830at 579.120 kb on - strand, within BWI76_RS02830at 579.136 kb on + strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.144 kb on - strand, within BWI76_RS02830at 579.153 kb on + strand, within BWI76_RS02830at 579.156 kb on - strand, within BWI76_RS02830at 579.169 kb on - strand, within BWI76_RS02830at 579.172 kb on + strand, within BWI76_RS02830at 579.240 kb on + strand, within BWI76_RS02830at 579.302 kb on - strandat 579.340 kb on - strandat 579.354 kb on - strandat 579.398 kb on + strandat 579.453 kb on + strandat 579.453 kb on + strandat 579.453 kb on + strandat 579.453 kb on + strandat 579.461 kb on - strandat 579.462 kb on - strandat 579.462 kb on - strandat 579.463 kb on - strandat 579.576 kb on + strandat 579.585 kb on + strandat 579.585 kb on + strandat 579.586 kb on + strandat 579.591 kb on + strandat 579.593 kb on - strandat 579.598 kb on + strandat 579.598 kb on + strandat 579.601 kb on + strandat 579.601 kb on + strandat 579.603 kb on + strandat 579.604 kb on - strandat 579.609 kb on - strandat 579.619 kb on - strandat 579.619 kb on - strandat 579.619 kb on - strandat 579.627 kb on - strandat 579.628 kb on - strandat 579.634 kb on + strandat 579.653 kb on + strandat 579.666 kb on + strandat 579.666 kb on - strandat 579.668 kb on + strandat 579.668 kb on + strandat 579.668 kb on + strandat 579.676 kb on - strandat 579.676 kb on - strandat 579.676 kb on - strandat 579.676 kb on - strandat 579.676 kb on - strandat 579.719 kb on - strandat 579.725 kb on + strandat 579.726 kb on + strandat 579.726 kb on + strandat 579.729 kb on - strandat 579.729 kb on - strandat 579.734 kb on - strandat 579.734 kb on - strandat 579.765 kb on + strandat 579.767 kb on - strandat 579.769 kb on + strandat 579.769 kb on + strandat 579.770 kb on + strandat 579.777 kb on + strandat 579.778 kb on - strandat 579.779 kb on - strandat 579.784 kb on - strandat 579.784 kb on - strandat 579.812 kb on + strandat 579.842 kb on + strand, within BWI76_RS02835at 579.843 kb on - strand, within BWI76_RS02835at 579.862 kb on + strand, within BWI76_RS02835at 579.862 kb on + strand, within BWI76_RS02835at 579.862 kb on + strand, within BWI76_RS02835at 579.862 kb on + strand, within BWI76_RS02835at 579.870 kb on - strand, within BWI76_RS02835at 579.870 kb on - strand, within BWI76_RS02835at 579.870 kb on - strand, within BWI76_RS02835at 579.870 kb on - strand, within BWI76_RS02835at 579.870 kb on - strand, within BWI76_RS02835at 579.888 kb on - strand, within BWI76_RS02835at 579.892 kb on + strand, within BWI76_RS02835at 579.912 kb on + strand, within BWI76_RS02835at 579.919 kb on + strand, within BWI76_RS02835at 579.927 kb on - strand, within BWI76_RS02835at 579.939 kb on + strand, within BWI76_RS02835at 579.995 kb on - strand, within BWI76_RS02835at 580.015 kb on + strand, within BWI76_RS02835at 580.015 kb on + strand, within BWI76_RS02835at 580.015 kb on + strand, within BWI76_RS02835at 580.021 kb on + strand, within BWI76_RS02835at 580.044 kb on + strand, within BWI76_RS02835at 580.063 kb on + strand, within BWI76_RS02835at 580.064 kb on + strand, within BWI76_RS02835at 580.076 kb on - strand, within BWI76_RS02835at 580.080 kb on + strand, within BWI76_RS02835at 580.080 kb on + strand, within BWI76_RS02835at 580.080 kb on + strand, within BWI76_RS02835at 580.080 kb on + strand, within BWI76_RS02835at 580.088 kb on - strand, within BWI76_RS02835at 580.095 kb on + strand, within BWI76_RS02835at 580.105 kb on + strand, within BWI76_RS02835at 580.105 kb on + strand, within BWI76_RS02835at 580.105 kb on + strand, within BWI76_RS02835at 580.105 kb on + strand, within BWI76_RS02835at 580.113 kb on - strand, within BWI76_RS02835at 580.113 kb on - strand, within BWI76_RS02835at 580.118 kb on + strand, within BWI76_RS02835at 580.118 kb on + strand, within BWI76_RS02835at 580.118 kb on + strand, within BWI76_RS02835at 580.118 kb on + strand, within BWI76_RS02835at 580.126 kb on - strand, within BWI76_RS02835at 580.126 kb on - strand, within BWI76_RS02835at 580.126 kb on - strand, within BWI76_RS02835at 580.126 kb on - strand, within BWI76_RS02835at 580.144 kb on + strand, within BWI76_RS02835at 580.149 kb on + strand, within BWI76_RS02835at 580.175 kb on + strand, within BWI76_RS02835at 580.183 kb on - strand, within BWI76_RS02835at 580.186 kb on + strand, within BWI76_RS02835at 580.220 kb on + strand, within BWI76_RS02835at 580.252 kb on - strand, within BWI76_RS02835at 580.252 kb on - strand, within BWI76_RS02835at 580.252 kb on - strand, within BWI76_RS02835at 580.252 kb on - strand, within BWI76_RS02835at 580.252 kb on - strand, within BWI76_RS02835at 580.254 kb on + strand, within BWI76_RS02835at 580.262 kb on - strand, within BWI76_RS02835at 580.267 kb on + strand, within BWI76_RS02835at 580.268 kb on + strand, within BWI76_RS02835at 580.268 kb on + strand, within BWI76_RS02835at 580.268 kb on + strand, within BWI76_RS02835at 580.275 kb on - strand, within BWI76_RS02835at 580.277 kb on + strand, within BWI76_RS02835at 580.277 kb on + strand, within BWI76_RS02835at 580.359 kb on + strand, within BWI76_RS02835

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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577,269 + +1.4
577,396 + +0.4
577,522 + BWI76_RS02825 0.11 +1.1
577,528 - BWI76_RS02825 0.12 +2.2
577,552 + BWI76_RS02825 0.17 -1.1
577,560 - BWI76_RS02825 0.18 -1.0
577,634 + BWI76_RS02825 0.32 -3.0
577,911 + BWI76_RS02825 0.83 +0.7
578,213 + -0.6
578,264 + +0.4
578,272 + -0.3
578,272 - +0.4
578,277 - -1.6
578,282 - +0.3
578,307 + BWI76_RS02830 0.11 +0.4
578,358 - BWI76_RS02830 0.16 -2.1
578,425 + BWI76_RS02830 0.21 -1.2
578,623 + BWI76_RS02830 0.38 +0.1
578,732 + BWI76_RS02830 0.47 +1.1
578,920 + BWI76_RS02830 0.62 -0.3
578,920 + BWI76_RS02830 0.62 -1.5
578,921 + BWI76_RS02830 0.62 -0.2
578,922 + BWI76_RS02830 0.62 -2.1
578,930 - BWI76_RS02830 0.63 +0.7
578,930 - BWI76_RS02830 0.63 -0.6
578,930 - BWI76_RS02830 0.63 +2.9
578,930 - BWI76_RS02830 0.63 -1.5
579,006 - BWI76_RS02830 0.69 -0.4
579,079 - BWI76_RS02830 0.75 -0.2
579,110 - BWI76_RS02830 0.78 +0.7
579,120 - BWI76_RS02830 0.79 -0.0
579,136 + BWI76_RS02830 0.80 +0.4
579,144 - BWI76_RS02830 0.81 +1.5
579,144 - BWI76_RS02830 0.81 -0.5
579,144 - BWI76_RS02830 0.81 -1.5
579,144 - BWI76_RS02830 0.81 -2.0
579,144 - BWI76_RS02830 0.81 -0.0
579,144 - BWI76_RS02830 0.81 -1.0
579,144 - BWI76_RS02830 0.81 -1.7
579,153 + BWI76_RS02830 0.81 -2.3
579,156 - BWI76_RS02830 0.82 -1.1
579,169 - BWI76_RS02830 0.83 -1.6
579,172 + BWI76_RS02830 0.83 -0.4
579,240 + BWI76_RS02830 0.89 +1.1
579,302 - -0.0
579,340 - -0.6
579,354 - -3.0
579,398 + -0.0
579,453 + -0.2
579,453 + -0.8
579,453 + +3.8
579,453 + -1.3
579,461 - -0.1
579,462 - -0.0
579,462 - +1.4
579,463 - -1.3
579,576 + +1.3
579,585 + +0.2
579,585 + -0.9
579,586 + -2.2
579,591 + -1.9
579,593 - +0.3
579,598 + +1.3
579,598 + -0.7
579,601 + +0.4
579,601 + -0.5
579,603 + +0.0
579,604 - +0.1
579,609 - -0.5
579,619 - -0.9
579,619 - -1.8
579,619 - -2.8
579,627 - +1.9
579,628 - +0.1
579,634 + +0.8
579,653 + -0.5
579,666 + +1.3
579,666 - +0.3
579,668 + +0.6
579,668 + +0.6
579,668 + +3.7
579,676 - +0.2
579,676 - +0.2
579,676 - +1.0
579,676 - -0.7
579,676 - -0.9
579,719 - -0.5
579,725 + -1.9
579,726 + +1.1
579,726 + +1.4
579,729 - +0.0
579,729 - +0.2
579,734 - +0.8
579,734 - -1.5
579,765 + -0.2
579,767 - +0.3
579,769 + -0.9
579,769 + -2.0
579,770 + -0.3
579,777 + -0.1
579,778 - -0.5
579,779 - +3.0
579,784 - +0.4
579,784 - +0.8
579,812 + -0.4
579,842 + BWI76_RS02835 0.12 +0.3
579,843 - BWI76_RS02835 0.12 -0.4
579,862 + BWI76_RS02835 0.14 -1.1
579,862 + BWI76_RS02835 0.14 -0.4
579,862 + BWI76_RS02835 0.14 -0.6
579,862 + BWI76_RS02835 0.14 -0.3
579,870 - BWI76_RS02835 0.15 +2.0
579,870 - BWI76_RS02835 0.15 -1.1
579,870 - BWI76_RS02835 0.15 -1.3
579,870 - BWI76_RS02835 0.15 +1.2
579,870 - BWI76_RS02835 0.15 -0.0
579,888 - BWI76_RS02835 0.16 +1.1
579,892 + BWI76_RS02835 0.16 -0.9
579,912 + BWI76_RS02835 0.18 -2.2
579,919 + BWI76_RS02835 0.19 -2.2
579,927 - BWI76_RS02835 0.20 -0.5
579,939 + BWI76_RS02835 0.21 +0.4
579,995 - BWI76_RS02835 0.25 -2.5
580,015 + BWI76_RS02835 0.27 -1.8
580,015 + BWI76_RS02835 0.27 +0.8
580,015 + BWI76_RS02835 0.27 +0.7
580,021 + BWI76_RS02835 0.28 +1.1
580,044 + BWI76_RS02835 0.30 +0.1
580,063 + BWI76_RS02835 0.31 +2.3
580,064 + BWI76_RS02835 0.31 +0.1
580,076 - BWI76_RS02835 0.33 +0.5
580,080 + BWI76_RS02835 0.33 -4.2
580,080 + BWI76_RS02835 0.33 +0.3
580,080 + BWI76_RS02835 0.33 -2.0
580,080 + BWI76_RS02835 0.33 -1.2
580,088 - BWI76_RS02835 0.34 -0.2
580,095 + BWI76_RS02835 0.34 -0.1
580,105 + BWI76_RS02835 0.35 -0.0
580,105 + BWI76_RS02835 0.35 -0.8
580,105 + BWI76_RS02835 0.35 +0.1
580,105 + BWI76_RS02835 0.35 -0.5
580,113 - BWI76_RS02835 0.36 +0.4
580,113 - BWI76_RS02835 0.36 -0.6
580,118 + BWI76_RS02835 0.36 -0.1
580,118 + BWI76_RS02835 0.36 -2.7
580,118 + BWI76_RS02835 0.36 -0.9
580,118 + BWI76_RS02835 0.36 -3.0
580,126 - BWI76_RS02835 0.37 -1.5
580,126 - BWI76_RS02835 0.37 -0.9
580,126 - BWI76_RS02835 0.37 -0.7
580,126 - BWI76_RS02835 0.37 -0.1
580,144 + BWI76_RS02835 0.38 -1.8
580,149 + BWI76_RS02835 0.39 +0.3
580,175 + BWI76_RS02835 0.41 -0.8
580,183 - BWI76_RS02835 0.42 +0.2
580,186 + BWI76_RS02835 0.42 +0.2
580,220 + BWI76_RS02835 0.45 +1.1
580,252 - BWI76_RS02835 0.48 -1.4
580,252 - BWI76_RS02835 0.48 -1.2
580,252 - BWI76_RS02835 0.48 +0.6
580,252 - BWI76_RS02835 0.48 -2.8
580,252 - BWI76_RS02835 0.48 +0.7
580,254 + BWI76_RS02835 0.48 +0.0
580,262 - BWI76_RS02835 0.49 -1.3
580,267 + BWI76_RS02835 0.49 -0.9
580,268 + BWI76_RS02835 0.49 -0.9
580,268 + BWI76_RS02835 0.49 +1.3
580,268 + BWI76_RS02835 0.49 +0.4
580,275 - BWI76_RS02835 0.50 -1.0
580,277 + BWI76_RS02835 0.50 +0.9
580,277 + BWI76_RS02835 0.50 -0.2
580,359 + BWI76_RS02835 0.57 -1.2

Or see this region's nucleotide sequence