Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02740 and BWI76_RS02745 are separated by 322 nucleotides BWI76_RS02745 and BWI76_RS02750 are separated by 67 nucleotides BWI76_RS02750 and BWI76_RS02755 are separated by 30 nucleotides
BWI76_RS02740: BWI76_RS02740 - putative transcriptional regulator, at 555,323 to 555,880
_RS02740
BWI76_RS02745: BWI76_RS02745 - hypothetical protein, at 556,203 to 556,409
_RS02745
BWI76_RS02750: BWI76_RS02750 - DNA-binding transcriptional regulator AraC, at 556,477 to 557,349
_RS02750
BWI76_RS02755: BWI76_RS02755 - beta-galactosidase, at 557,380 to 559,389
_RS02755
Position (kb) 556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.478 kb on - strand, within BWI76_RS02740 at 555.568 kb on + strand, within BWI76_RS02740 at 555.634 kb on - strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.683 kb on + strand, within BWI76_RS02740 at 555.763 kb on + strand, within BWI76_RS02740 at 555.775 kb on + strand, within BWI76_RS02740 at 555.798 kb on - strand, within BWI76_RS02740 at 555.874 kb on + strand at 555.882 kb on - strand at 555.883 kb on - strand at 556.228 kb on - strand, within BWI76_RS02745 at 556.434 kb on + strand at 556.574 kb on + strand, within BWI76_RS02750 at 556.790 kb on + strand, within BWI76_RS02750 at 556.844 kb on - strand, within BWI76_RS02750 at 557.024 kb on - strand, within BWI76_RS02750 at 557.068 kb on - strand, within BWI76_RS02750 at 557.142 kb on + strand, within BWI76_RS02750 at 557.145 kb on - strand, within BWI76_RS02750 at 557.236 kb on + strand, within BWI76_RS02750 at 557.244 kb on - strand, within BWI76_RS02750 at 557.739 kb on + strand, within BWI76_RS02755 at 557.829 kb on + strand, within BWI76_RS02755 at 557.853 kb on + strand, within BWI76_RS02755 at 557.863 kb on + strand, within BWI76_RS02755 at 557.871 kb on - strand, within BWI76_RS02755 at 557.946 kb on + strand, within BWI76_RS02755 at 557.953 kb on + strand, within BWI76_RS02755 at 557.976 kb on + strand, within BWI76_RS02755 at 557.976 kb on + strand, within BWI76_RS02755 at 557.984 kb on - strand, within BWI76_RS02755 at 557.984 kb on - strand, within BWI76_RS02755 at 558.146 kb on + strand, within BWI76_RS02755 at 558.177 kb on + strand, within BWI76_RS02755 at 558.288 kb on + strand, within BWI76_RS02755
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 555,478 - BWI76_RS02740 0.28 -1.7 555,568 + BWI76_RS02740 0.44 -0.0 555,634 - BWI76_RS02740 0.56 -0.1 555,683 + BWI76_RS02740 0.65 +3.7 555,683 + BWI76_RS02740 0.65 -0.2 555,763 + BWI76_RS02740 0.79 +0.8 555,775 + BWI76_RS02740 0.81 +0.1 555,798 - BWI76_RS02740 0.85 -2.4 555,874 + -0.6 555,882 - +2.6 555,883 - -0.1 556,228 - BWI76_RS02745 0.12 -2.7 556,434 + -0.4 556,574 + BWI76_RS02750 0.11 +1.0 556,790 + BWI76_RS02750 0.36 -0.4 556,844 - BWI76_RS02750 0.42 -1.8 557,024 - BWI76_RS02750 0.63 -0.2 557,068 - BWI76_RS02750 0.68 +3.3 557,142 + BWI76_RS02750 0.76 -0.7 557,145 - BWI76_RS02750 0.77 +0.9 557,236 + BWI76_RS02750 0.87 -0.6 557,244 - BWI76_RS02750 0.88 +0.7 557,739 + BWI76_RS02755 0.18 -0.6 557,829 + BWI76_RS02755 0.22 -0.1 557,853 + BWI76_RS02755 0.24 -0.2 557,863 + BWI76_RS02755 0.24 -3.1 557,871 - BWI76_RS02755 0.24 +0.3 557,946 + BWI76_RS02755 0.28 +0.6 557,953 + BWI76_RS02755 0.29 +1.2 557,976 + BWI76_RS02755 0.30 -0.2 557,976 + BWI76_RS02755 0.30 -1.6 557,984 - BWI76_RS02755 0.30 -0.1 557,984 - BWI76_RS02755 0.30 +0.6 558,146 + BWI76_RS02755 0.38 +0.6 558,177 + BWI76_RS02755 0.40 +2.0 558,288 + BWI76_RS02755 0.45 -0.2
Or see this region's nucleotide sequence