Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02710 and BWI76_RS02715 are separated by 75 nucleotides BWI76_RS02715 and BWI76_RS02720 are separated by 80 nucleotides
BWI76_RS02710: BWI76_RS02710 - EamA family transporter, at 549,134 to 550,105
_RS02710
BWI76_RS02715: BWI76_RS02715 - putative helix-turn-helix AraC-type transcriptional regulator, at 550,181 to 551,005
_RS02715
BWI76_RS02720: BWI76_RS02720 - NAD(P)-dependent oxidoreductase, at 551,086 to 551,934
_RS02720
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.182 kb on + strand at 549.280 kb on - strand, within BWI76_RS02710 at 549.395 kb on + strand, within BWI76_RS02710 at 549.408 kb on - strand, within BWI76_RS02710 at 549.432 kb on - strand, within BWI76_RS02710 at 549.573 kb on + strand, within BWI76_RS02710 at 549.583 kb on + strand, within BWI76_RS02710 at 549.591 kb on - strand, within BWI76_RS02710 at 549.591 kb on - strand, within BWI76_RS02710 at 549.602 kb on - strand, within BWI76_RS02710 at 549.711 kb on + strand, within BWI76_RS02710 at 549.716 kb on + strand, within BWI76_RS02710 at 549.857 kb on + strand, within BWI76_RS02710 at 549.857 kb on + strand, within BWI76_RS02710 at 549.857 kb on + strand, within BWI76_RS02710 at 549.959 kb on + strand, within BWI76_RS02710 at 550.138 kb on + strand at 550.138 kb on + strand at 550.224 kb on - strand at 550.235 kb on + strand at 550.247 kb on + strand at 550.255 kb on - strand at 550.255 kb on - strand at 550.521 kb on - strand, within BWI76_RS02715 at 550.654 kb on + strand, within BWI76_RS02715 at 550.761 kb on + strand, within BWI76_RS02715 at 550.789 kb on + strand, within BWI76_RS02715 at 550.818 kb on - strand, within BWI76_RS02715 at 550.881 kb on - strand, within BWI76_RS02715 at 550.896 kb on - strand, within BWI76_RS02715 at 550.896 kb on - strand, within BWI76_RS02715 at 550.985 kb on - strand at 551.229 kb on + strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.318 kb on - strand, within BWI76_RS02720 at 551.341 kb on - strand, within BWI76_RS02720 at 551.543 kb on - strand, within BWI76_RS02720 at 551.604 kb on - strand, within BWI76_RS02720 at 551.666 kb on + strand, within BWI76_RS02720 at 551.854 kb on - strand at 551.901 kb on - strand at 551.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 549,182 + +0.5 549,280 - BWI76_RS02710 0.15 -0.5 549,395 + BWI76_RS02710 0.27 +0.5 549,408 - BWI76_RS02710 0.28 -0.6 549,432 - BWI76_RS02710 0.31 -1.9 549,573 + BWI76_RS02710 0.45 +0.1 549,583 + BWI76_RS02710 0.46 +0.8 549,591 - BWI76_RS02710 0.47 +0.0 549,591 - BWI76_RS02710 0.47 +0.6 549,602 - BWI76_RS02710 0.48 -0.6 549,711 + BWI76_RS02710 0.59 -2.1 549,716 + BWI76_RS02710 0.60 +0.2 549,857 + BWI76_RS02710 0.74 -0.1 549,857 + BWI76_RS02710 0.74 -2.4 549,857 + BWI76_RS02710 0.74 +0.9 549,959 + BWI76_RS02710 0.85 +0.6 550,138 + +0.3 550,138 + -0.1 550,224 - +0.8 550,235 + -1.0 550,247 + +0.2 550,255 - -0.1 550,255 - +1.6 550,521 - BWI76_RS02715 0.41 -1.4 550,654 + BWI76_RS02715 0.57 -0.1 550,761 + BWI76_RS02715 0.70 -0.8 550,789 + BWI76_RS02715 0.74 +1.1 550,818 - BWI76_RS02715 0.77 +0.8 550,881 - BWI76_RS02715 0.85 +0.2 550,896 - BWI76_RS02715 0.87 +1.7 550,896 - BWI76_RS02715 0.87 -0.2 550,985 - -1.3 551,229 + BWI76_RS02720 0.17 -0.8 551,237 - BWI76_RS02720 0.18 -0.2 551,237 - BWI76_RS02720 0.18 +0.1 551,318 - BWI76_RS02720 0.27 -0.5 551,341 - BWI76_RS02720 0.30 -0.8 551,543 - BWI76_RS02720 0.54 -0.2 551,604 - BWI76_RS02720 0.61 -0.3 551,666 + BWI76_RS02720 0.68 +0.6 551,854 - +2.6 551,901 - +1.5 551,937 + -1.5
Or see this region's nucleotide sequence