Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02655 and BWI76_RS02660 are separated by 337 nucleotides BWI76_RS02660 and BWI76_RS02665 are separated by 5 nucleotides BWI76_RS02665 and BWI76_RS02670 are separated by 4 nucleotides BWI76_RS02670 and BWI76_RS02675 are separated by 41 nucleotides BWI76_RS02675 and BWI76_RS02680 are separated by 146 nucleotides
BWI76_RS02655: BWI76_RS02655 - hypothetical protein, at 541,860 to 542,135
_RS02655
BWI76_RS02660: BWI76_RS02660 - 30S ribosomal protein S6, at 542,473 to 542,868
_RS02660
BWI76_RS02665: BWI76_RS02665 - primosomal replication protein N, at 542,874 to 543,188
_RS02665
BWI76_RS02670: BWI76_RS02670 - 30S ribosomal protein S18, at 543,193 to 543,420
_RS02670
BWI76_RS02675: BWI76_RS02675 - 50S ribosomal protein L9, at 543,462 to 543,911
_RS02675
BWI76_RS02680: BWI76_RS02680 - EamA family transporter, at 544,058 to 545,011
_RS02680
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.874 kb on - strand at 541.940 kb on - strand, within BWI76_RS02655 at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.164 kb on - strand at 542.193 kb on + strand at 543.723 kb on + strand, within BWI76_RS02675 at 544.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 541,874 - +2.5 541,940 - BWI76_RS02655 0.29 +0.7 542,146 + +0.5 542,146 + +0.5 542,146 + +0.3 542,146 + +2.0 542,154 - +0.8 542,154 - +0.5 542,154 - -0.2 542,154 - +0.5 542,164 - +0.9 542,193 + +1.2 543,723 + BWI76_RS02675 0.58 -2.3 544,109 + +0.4
Or see this region's nucleotide sequence