Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02435 and BWI76_RS02440 are separated by 140 nucleotides BWI76_RS02440 and BWI76_RS02445 are separated by 10 nucleotides BWI76_RS02445 and BWI76_RS02450 are separated by 10 nucleotides BWI76_RS02450 and BWI76_RS02455 overlap by 8 nucleotides
BWI76_RS02435: BWI76_RS02435 - outer membrane lipoprotein Blc, at 499,493 to 500,023
_RS02435
BWI76_RS02440: BWI76_RS02440 - fumarate reductase subunit D, at 500,164 to 500,523
_RS02440
BWI76_RS02445: BWI76_RS02445 - fumarate reductase subunit C, at 500,534 to 500,929
_RS02445
BWI76_RS02450: BWI76_RS02450 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 500,940 to 501,674
_RS02450
BWI76_RS02455: BWI76_RS02455 - fumarate reductase flavoprotein subunit, at 501,667 to 503,457
_RS02455
Position (kb) 500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 499.606 kb on + strand, within BWI76_RS02435 at 499.614 kb on - strand, within BWI76_RS02435 at 499.828 kb on + strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.836 kb on - strand, within BWI76_RS02435 at 499.934 kb on - strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 499.960 kb on + strand, within BWI76_RS02435 at 500.052 kb on + strand at 500.299 kb on - strand, within BWI76_RS02440 at 500.304 kb on + strand, within BWI76_RS02440 at 500.463 kb on - strand, within BWI76_RS02440 at 500.543 kb on - strand at 500.543 kb on - strand at 500.586 kb on + strand, within BWI76_RS02445 at 500.762 kb on + strand, within BWI76_RS02445 at 500.848 kb on + strand, within BWI76_RS02445 at 500.850 kb on + strand, within BWI76_RS02445 at 500.911 kb on - strand at 500.948 kb on + strand at 500.956 kb on - strand at 500.994 kb on - strand at 501.287 kb on + strand, within BWI76_RS02450 at 501.420 kb on - strand, within BWI76_RS02450 at 501.475 kb on - strand, within BWI76_RS02450 at 501.505 kb on + strand, within BWI76_RS02450 at 501.552 kb on - strand, within BWI76_RS02450 at 501.601 kb on + strand at 501.601 kb on + strand at 501.688 kb on + strand at 501.874 kb on - strand, within BWI76_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 499,606 + BWI76_RS02435 0.21 -1.7 499,614 - BWI76_RS02435 0.23 +0.7 499,828 + BWI76_RS02435 0.63 +0.8 499,836 - BWI76_RS02435 0.65 +0.7 499,836 - BWI76_RS02435 0.65 +0.4 499,836 - BWI76_RS02435 0.65 -0.1 499,934 - BWI76_RS02435 0.83 +1.1 499,960 + BWI76_RS02435 0.88 +1.1 499,960 + BWI76_RS02435 0.88 +0.7 499,960 + BWI76_RS02435 0.88 +0.4 500,052 + -1.2 500,299 - BWI76_RS02440 0.38 -1.3 500,304 + BWI76_RS02440 0.39 -0.3 500,463 - BWI76_RS02440 0.83 -0.5 500,543 - -0.9 500,543 - -0.7 500,586 + BWI76_RS02445 0.13 +1.1 500,762 + BWI76_RS02445 0.58 -3.7 500,848 + BWI76_RS02445 0.79 -1.2 500,850 + BWI76_RS02445 0.80 -0.0 500,911 - -3.5 500,948 + -1.6 500,956 - +0.5 500,994 - +0.1 501,287 + BWI76_RS02450 0.47 -0.2 501,420 - BWI76_RS02450 0.65 -0.5 501,475 - BWI76_RS02450 0.73 -1.3 501,505 + BWI76_RS02450 0.77 -2.9 501,552 - BWI76_RS02450 0.83 -2.5 501,601 + +0.4 501,601 + -2.1 501,688 + -1.9 501,874 - BWI76_RS02455 0.12 -1.0
Or see this region's nucleotide sequence