Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02095 and BWI76_RS02100 are separated by 92 nucleotides BWI76_RS02100 and BWI76_RS02105 are separated by 67 nucleotides
BWI76_RS02095: BWI76_RS02095 - acetyl-coenzyme A synthetase, at 431,834 to 433,792
_RS02095
BWI76_RS02100: BWI76_RS02100 - hypothetical protein, at 433,885 to 434,136
_RS02100
BWI76_RS02105: BWI76_RS02105 - glutamate/aspartate:proton symporter GltP, at 434,204 to 435,517
_RS02105
Position (kb) 433
434
435 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 432.975 kb on + strand, within BWI76_RS02095 at 432.983 kb on - strand, within BWI76_RS02095 at 433.039 kb on + strand, within BWI76_RS02095 at 433.080 kb on + strand, within BWI76_RS02095 at 433.138 kb on - strand, within BWI76_RS02095 at 433.182 kb on + strand, within BWI76_RS02095 at 433.413 kb on + strand, within BWI76_RS02095 at 433.513 kb on - strand, within BWI76_RS02095 at 433.716 kb on + strand at 433.726 kb on + strand at 434.147 kb on + strand at 434.196 kb on + strand at 434.258 kb on - strand at 434.275 kb on - strand at 434.316 kb on + strand at 434.353 kb on - strand, within BWI76_RS02105 at 434.387 kb on + strand, within BWI76_RS02105 at 434.481 kb on + strand, within BWI76_RS02105 at 434.484 kb on - strand, within BWI76_RS02105 at 434.502 kb on + strand, within BWI76_RS02105 at 434.510 kb on - strand, within BWI76_RS02105 at 434.600 kb on + strand, within BWI76_RS02105 at 434.608 kb on - strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.948 kb on + strand, within BWI76_RS02105 at 435.076 kb on + strand, within BWI76_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 432,975 + BWI76_RS02095 0.58 -2.1 432,983 - BWI76_RS02095 0.59 -1.9 433,039 + BWI76_RS02095 0.62 -1.2 433,080 + BWI76_RS02095 0.64 -4.3 433,138 - BWI76_RS02095 0.67 +0.2 433,182 + BWI76_RS02095 0.69 -4.5 433,413 + BWI76_RS02095 0.81 -2.6 433,513 - BWI76_RS02095 0.86 -3.0 433,716 + -1.9 433,726 + -3.1 434,147 + +0.7 434,196 + +0.5 434,258 - -0.1 434,275 - +0.3 434,316 + -0.0 434,353 - BWI76_RS02105 0.11 +0.2 434,387 + BWI76_RS02105 0.14 -1.5 434,481 + BWI76_RS02105 0.21 -1.0 434,484 - BWI76_RS02105 0.21 +0.3 434,502 + BWI76_RS02105 0.23 +1.1 434,510 - BWI76_RS02105 0.23 -0.4 434,600 + BWI76_RS02105 0.30 -1.3 434,608 - BWI76_RS02105 0.31 +0.3 434,848 + BWI76_RS02105 0.49 +1.5 434,848 + BWI76_RS02105 0.49 -0.3 434,948 + BWI76_RS02105 0.57 +0.7 435,076 + BWI76_RS02105 0.66 -0.5
Or see this region's nucleotide sequence