Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02085

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02080 and BWI76_RS02085 are separated by 42 nucleotidesBWI76_RS02085 and BWI76_RS02090 overlap by 4 nucleotidesBWI76_RS02090 and BWI76_RS02095 are separated by 182 nucleotides BWI76_RS02080: BWI76_RS02080 - fimbrial protein, at 428,545 to 429,648 _RS02080 BWI76_RS02085: BWI76_RS02085 - cation acetate symporter, at 429,691 to 431,340 _RS02085 BWI76_RS02090: BWI76_RS02090 - membrane protein, at 431,337 to 431,651 _RS02090 BWI76_RS02095: BWI76_RS02095 - acetyl-coenzyme A synthetase, at 431,834 to 433,792 _RS02095 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 428.736 kb on + strand, within BWI76_RS02080at 428.742 kb on - strand, within BWI76_RS02080at 428.744 kb on - strand, within BWI76_RS02080at 428.826 kb on + strand, within BWI76_RS02080at 428.826 kb on + strand, within BWI76_RS02080at 428.846 kb on + strand, within BWI76_RS02080at 428.847 kb on + strand, within BWI76_RS02080at 428.872 kb on + strand, within BWI76_RS02080at 428.922 kb on + strand, within BWI76_RS02080at 428.928 kb on - strand, within BWI76_RS02080at 428.938 kb on + strand, within BWI76_RS02080at 428.938 kb on + strand, within BWI76_RS02080at 428.946 kb on - strand, within BWI76_RS02080at 428.946 kb on - strand, within BWI76_RS02080at 428.946 kb on - strand, within BWI76_RS02080at 428.974 kb on + strand, within BWI76_RS02080at 428.984 kb on + strand, within BWI76_RS02080at 428.992 kb on - strand, within BWI76_RS02080at 428.992 kb on - strand, within BWI76_RS02080at 429.004 kb on - strand, within BWI76_RS02080at 429.032 kb on + strand, within BWI76_RS02080at 429.034 kb on + strand, within BWI76_RS02080at 429.040 kb on + strand, within BWI76_RS02080at 429.040 kb on + strand, within BWI76_RS02080at 429.042 kb on + strand, within BWI76_RS02080at 429.048 kb on - strandat 429.050 kb on - strand, within BWI76_RS02080at 429.059 kb on + strand, within BWI76_RS02080at 429.060 kb on - strand, within BWI76_RS02080at 429.060 kb on - strand, within BWI76_RS02080at 429.067 kb on + strand, within BWI76_RS02080at 429.067 kb on + strand, within BWI76_RS02080at 429.082 kb on + strand, within BWI76_RS02080at 429.165 kb on + strand, within BWI76_RS02080at 429.165 kb on + strand, within BWI76_RS02080at 429.167 kb on + strand, within BWI76_RS02080at 429.167 kb on + strand, within BWI76_RS02080at 429.167 kb on + strand, within BWI76_RS02080at 429.168 kb on - strand, within BWI76_RS02080at 429.168 kb on - strand, within BWI76_RS02080at 429.173 kb on - strand, within BWI76_RS02080at 429.173 kb on - strand, within BWI76_RS02080at 429.173 kb on - strand, within BWI76_RS02080at 429.175 kb on - strand, within BWI76_RS02080at 429.175 kb on - strand, within BWI76_RS02080at 429.177 kb on + strand, within BWI76_RS02080at 429.182 kb on + strand, within BWI76_RS02080at 429.185 kb on - strand, within BWI76_RS02080at 429.217 kb on - strand, within BWI76_RS02080at 429.232 kb on - strand, within BWI76_RS02080at 429.263 kb on + strand, within BWI76_RS02080at 429.263 kb on + strand, within BWI76_RS02080at 429.263 kb on + strand, within BWI76_RS02080at 429.263 kb on + strand, within BWI76_RS02080at 429.271 kb on - strand, within BWI76_RS02080at 429.271 kb on - strand, within BWI76_RS02080at 429.271 kb on - strand, within BWI76_RS02080at 429.313 kb on - strand, within BWI76_RS02080at 429.329 kb on + strand, within BWI76_RS02080at 429.386 kb on + strand, within BWI76_RS02080at 429.386 kb on + strand, within BWI76_RS02080at 429.386 kb on + strand, within BWI76_RS02080at 429.440 kb on + strand, within BWI76_RS02080at 429.442 kb on - strand, within BWI76_RS02080at 429.472 kb on + strand, within BWI76_RS02080at 429.473 kb on - strand, within BWI76_RS02080at 429.536 kb on - strand, within BWI76_RS02080at 429.618 kb on - strandat 429.633 kb on - strandat 429.640 kb on - strandat 429.651 kb on - strandat 429.705 kb on - strandat 429.725 kb on - strandat 429.736 kb on + strandat 429.742 kb on - strandat 429.742 kb on - strandat 429.742 kb on - strandat 429.742 kb on - strandat 429.746 kb on + strandat 429.756 kb on + strandat 429.830 kb on + strandat 429.838 kb on - strandat 429.918 kb on + strand, within BWI76_RS02085at 430.036 kb on + strand, within BWI76_RS02085at 430.138 kb on - strand, within BWI76_RS02085at 430.178 kb on - strand, within BWI76_RS02085at 430.190 kb on - strand, within BWI76_RS02085at 430.405 kb on + strand, within BWI76_RS02085at 430.481 kb on - strand, within BWI76_RS02085at 430.525 kb on - strand, within BWI76_RS02085at 430.538 kb on - strand, within BWI76_RS02085at 430.673 kb on - strand, within BWI76_RS02085at 430.696 kb on + strand, within BWI76_RS02085at 430.745 kb on - strand, within BWI76_RS02085at 430.888 kb on + strand, within BWI76_RS02085at 430.914 kb on + strand, within BWI76_RS02085at 430.922 kb on - strand, within BWI76_RS02085at 430.976 kb on - strand, within BWI76_RS02085at 431.056 kb on - strand, within BWI76_RS02085at 431.056 kb on - strand, within BWI76_RS02085at 431.082 kb on - strand, within BWI76_RS02085at 431.192 kb on + strandat 431.200 kb on - strandat 431.265 kb on - strandat 431.265 kb on - strandat 431.270 kb on - strandat 431.323 kb on + strandat 431.344 kb on + strandat 431.502 kb on - strand, within BWI76_RS02090at 431.536 kb on - strand, within BWI76_RS02090at 431.559 kb on - strand, within BWI76_RS02090at 431.668 kb on - strandat 431.726 kb on - strandat 431.728 kb on + strandat 431.762 kb on + strandat 431.770 kb on - strandat 431.815 kb on + strandat 431.847 kb on + strandat 431.901 kb on + strandat 432.063 kb on + strand, within BWI76_RS02095at 432.066 kb on - strandat 432.071 kb on - strand, within BWI76_RS02095at 432.094 kb on + strand, within BWI76_RS02095at 432.094 kb on + strand, within BWI76_RS02095at 432.110 kb on + strand, within BWI76_RS02095at 432.126 kb on + strand, within BWI76_RS02095at 432.297 kb on + strand, within BWI76_RS02095

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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428,736 + BWI76_RS02080 0.17 -2.4
428,742 - BWI76_RS02080 0.18 +2.9
428,744 - BWI76_RS02080 0.18 +0.6
428,826 + BWI76_RS02080 0.25 -3.3
428,826 + BWI76_RS02080 0.25 -2.1
428,846 + BWI76_RS02080 0.27 +2.0
428,847 + BWI76_RS02080 0.27 +0.1
428,872 + BWI76_RS02080 0.30 -1.8
428,922 + BWI76_RS02080 0.34 -0.5
428,928 - BWI76_RS02080 0.35 +1.0
428,938 + BWI76_RS02080 0.36 -0.5
428,938 + BWI76_RS02080 0.36 -1.4
428,946 - BWI76_RS02080 0.36 -1.0
428,946 - BWI76_RS02080 0.36 -3.9
428,946 - BWI76_RS02080 0.36 +0.1
428,974 + BWI76_RS02080 0.39 -2.1
428,984 + BWI76_RS02080 0.40 -2.5
428,992 - BWI76_RS02080 0.40 -1.1
428,992 - BWI76_RS02080 0.40 -0.7
429,004 - BWI76_RS02080 0.42 +1.6
429,032 + BWI76_RS02080 0.44 -1.1
429,034 + BWI76_RS02080 0.44 -1.0
429,040 + BWI76_RS02080 0.45 -0.4
429,040 + BWI76_RS02080 0.45 -0.4
429,042 + BWI76_RS02080 0.45 +0.2
429,048 - -0.2
429,050 - BWI76_RS02080 0.46 +0.1
429,059 + BWI76_RS02080 0.47 +2.5
429,060 - BWI76_RS02080 0.47 -0.7
429,060 - BWI76_RS02080 0.47 +0.7
429,067 + BWI76_RS02080 0.47 +1.1
429,067 + BWI76_RS02080 0.47 -1.1
429,082 + BWI76_RS02080 0.49 +0.6
429,165 + BWI76_RS02080 0.56 +0.4
429,165 + BWI76_RS02080 0.56 -1.9
429,167 + BWI76_RS02080 0.56 +0.1
429,167 + BWI76_RS02080 0.56 +0.4
429,167 + BWI76_RS02080 0.56 -0.4
429,168 - BWI76_RS02080 0.56 +0.2
429,168 - BWI76_RS02080 0.56 -2.2
429,173 - BWI76_RS02080 0.57 -0.3
429,173 - BWI76_RS02080 0.57 -0.4
429,173 - BWI76_RS02080 0.57 +0.4
429,175 - BWI76_RS02080 0.57 -1.1
429,175 - BWI76_RS02080 0.57 -1.5
429,177 + BWI76_RS02080 0.57 +0.6
429,182 + BWI76_RS02080 0.58 -0.7
429,185 - BWI76_RS02080 0.58 -0.5
429,217 - BWI76_RS02080 0.61 -0.1
429,232 - BWI76_RS02080 0.62 -0.3
429,263 + BWI76_RS02080 0.65 +0.3
429,263 + BWI76_RS02080 0.65 -0.0
429,263 + BWI76_RS02080 0.65 +1.1
429,263 + BWI76_RS02080 0.65 -0.9
429,271 - BWI76_RS02080 0.66 -4.1
429,271 - BWI76_RS02080 0.66 +0.0
429,271 - BWI76_RS02080 0.66 -2.3
429,313 - BWI76_RS02080 0.70 -2.2
429,329 + BWI76_RS02080 0.71 -0.4
429,386 + BWI76_RS02080 0.76 -2.0
429,386 + BWI76_RS02080 0.76 -0.5
429,386 + BWI76_RS02080 0.76 +0.7
429,440 + BWI76_RS02080 0.81 +0.4
429,442 - BWI76_RS02080 0.81 -0.5
429,472 + BWI76_RS02080 0.84 -1.1
429,473 - BWI76_RS02080 0.84 +1.5
429,536 - BWI76_RS02080 0.90 +0.5
429,618 - -1.2
429,633 - +0.6
429,640 - +0.1
429,651 - +0.6
429,705 - +0.9
429,725 - +0.1
429,736 + -1.7
429,742 - +0.1
429,742 - -1.2
429,742 - -0.6
429,742 - -2.5
429,746 + -0.5
429,756 + -2.4
429,830 + -1.2
429,838 - -1.8
429,918 + BWI76_RS02085 0.14 -0.3
430,036 + BWI76_RS02085 0.21 -1.1
430,138 - BWI76_RS02085 0.27 -0.2
430,178 - BWI76_RS02085 0.30 +0.7
430,190 - BWI76_RS02085 0.30 +1.2
430,405 + BWI76_RS02085 0.43 +3.4
430,481 - BWI76_RS02085 0.48 -1.2
430,525 - BWI76_RS02085 0.51 -1.6
430,538 - BWI76_RS02085 0.51 -0.5
430,673 - BWI76_RS02085 0.60 +0.3
430,696 + BWI76_RS02085 0.61 -2.5
430,745 - BWI76_RS02085 0.64 +0.1
430,888 + BWI76_RS02085 0.73 +1.7
430,914 + BWI76_RS02085 0.74 -2.0
430,922 - BWI76_RS02085 0.75 +0.6
430,976 - BWI76_RS02085 0.78 -1.2
431,056 - BWI76_RS02085 0.83 -1.6
431,056 - BWI76_RS02085 0.83 -1.0
431,082 - BWI76_RS02085 0.84 -4.8
431,192 + -0.8
431,200 - -3.8
431,265 - -0.5
431,265 - +0.4
431,270 - -0.3
431,323 + -0.4
431,344 + -3.2
431,502 - BWI76_RS02090 0.52 -0.6
431,536 - BWI76_RS02090 0.63 -1.5
431,559 - BWI76_RS02090 0.70 -2.2
431,668 - -1.0
431,726 - -0.9
431,728 + -2.5
431,762 + +0.1
431,770 - +0.4
431,815 + -1.2
431,847 + -1.5
431,901 + -4.0
432,063 + BWI76_RS02095 0.12 -2.5
432,066 - +0.9
432,071 - BWI76_RS02095 0.12 -2.4
432,094 + BWI76_RS02095 0.13 -2.3
432,094 + BWI76_RS02095 0.13 -4.1
432,110 + BWI76_RS02095 0.14 -4.8
432,126 + BWI76_RS02095 0.15 -0.8
432,297 + BWI76_RS02095 0.24 +0.4

Or see this region's nucleotide sequence