Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01910 and BWI76_RS01915 are separated by 61 nucleotides BWI76_RS01915 and BWI76_RS01920 are separated by 145 nucleotides
BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379
_RS01910
BWI76_RS01915: BWI76_RS01915 - replicative DNA helicase, at 389,441 to 390,856
_RS01915
BWI76_RS01920: BWI76_RS01920 - alanine racemase, at 391,002 to 392,081
_RS01920
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.677 kb on - strand, within BWI76_RS01910 at 388.735 kb on + strand, within BWI76_RS01910 at 388.795 kb on - strand, within BWI76_RS01910 at 388.859 kb on + strand, within BWI76_RS01910 at 388.905 kb on + strand, within BWI76_RS01910 at 388.917 kb on + strand, within BWI76_RS01910 at 388.925 kb on - strand, within BWI76_RS01910 at 388.988 kb on + strand, within BWI76_RS01910 at 388.997 kb on + strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 389.098 kb on - strand, within BWI76_RS01910 at 389.107 kb on - strand, within BWI76_RS01910 at 389.132 kb on - strand, within BWI76_RS01910 at 389.246 kb on - strand, within BWI76_RS01910 at 389.278 kb on - strand, within BWI76_RS01910 at 389.278 kb on - strand, within BWI76_RS01910 at 389.327 kb on - strand at 389.383 kb on - strand at 390.894 kb on + strand at 390.897 kb on - strand at 391.119 kb on - strand, within BWI76_RS01920 at 391.131 kb on - strand, within BWI76_RS01920 at 391.148 kb on + strand, within BWI76_RS01920 at 391.156 kb on - strand, within BWI76_RS01920 at 391.188 kb on + strand, within BWI76_RS01920 at 391.301 kb on - strand, within BWI76_RS01920 at 391.301 kb on - strand, within BWI76_RS01920 at 391.417 kb on + strand, within BWI76_RS01920 at 391.429 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.447 kb on - strand, within BWI76_RS01920 at 391.555 kb on + strand, within BWI76_RS01920 at 391.590 kb on + strand, within BWI76_RS01920 at 391.830 kb on + strand, within BWI76_RS01920
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 388,677 - BWI76_RS01910 0.29 +1.2 388,735 + BWI76_RS01910 0.34 -0.1 388,795 - BWI76_RS01910 0.41 +0.7 388,859 + BWI76_RS01910 0.47 -0.6 388,905 + BWI76_RS01910 0.52 -2.8 388,917 + BWI76_RS01910 0.53 +1.7 388,925 - BWI76_RS01910 0.54 +0.2 388,988 + BWI76_RS01910 0.60 -0.2 388,997 + BWI76_RS01910 0.61 +0.3 388,998 - BWI76_RS01910 0.61 -0.0 388,998 - BWI76_RS01910 0.61 -1.0 389,098 - BWI76_RS01910 0.71 -0.3 389,107 - BWI76_RS01910 0.72 -0.4 389,132 - BWI76_RS01910 0.75 +1.3 389,246 - BWI76_RS01910 0.86 -1.2 389,278 - BWI76_RS01910 0.90 -0.5 389,278 - BWI76_RS01910 0.90 +1.1 389,327 - +0.1 389,383 - -1.9 390,894 + -0.3 390,897 - +0.6 391,119 - BWI76_RS01920 0.11 +1.2 391,131 - BWI76_RS01920 0.12 +0.1 391,148 + BWI76_RS01920 0.14 +2.1 391,156 - BWI76_RS01920 0.14 +0.8 391,188 + BWI76_RS01920 0.17 +0.2 391,301 - BWI76_RS01920 0.28 +1.3 391,301 - BWI76_RS01920 0.28 +1.3 391,417 + BWI76_RS01920 0.38 +0.3 391,429 + BWI76_RS01920 0.40 +0.1 391,439 + BWI76_RS01920 0.40 +1.0 391,439 + BWI76_RS01920 0.40 +0.5 391,447 - BWI76_RS01920 0.41 -0.3 391,555 + BWI76_RS01920 0.51 +0.4 391,590 + BWI76_RS01920 0.54 -1.0 391,830 + BWI76_RS01920 0.77 -0.4
Or see this region's nucleotide sequence