Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01845 and BWI76_RS01850 are separated by 107 nucleotides BWI76_RS01850 and BWI76_RS01855 are separated by 188 nucleotides BWI76_RS01855 and BWI76_RS01860 are separated by 12 nucleotides
BWI76_RS01845: BWI76_RS01845 - maltoporin, at 376,068 to 377,354
_RS01845
BWI76_RS01850: BWI76_RS01850 - maltose operon protein MalM, at 377,462 to 378,394
_RS01850
BWI76_RS01855: BWI76_RS01855 - chorismate lyase, at 378,583 to 379,080
_RS01855
BWI76_RS01860: BWI76_RS01860 - 4-hydroxybenzoate octaprenyltransferase, at 379,093 to 379,962
_RS01860
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 376.547 kb on - strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.733 kb on - strand, within BWI76_RS01845 at 376.786 kb on + strand, within BWI76_RS01845 at 376.932 kb on + strand, within BWI76_RS01845 at 377.030 kb on + strand, within BWI76_RS01845 at 377.195 kb on - strand, within BWI76_RS01845 at 377.487 kb on + strand at 377.608 kb on + strand, within BWI76_RS01850 at 377.782 kb on - strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 377.998 kb on + strand, within BWI76_RS01850 at 378.006 kb on - strand, within BWI76_RS01850 at 378.093 kb on + strand, within BWI76_RS01850 at 378.108 kb on + strand, within BWI76_RS01850 at 378.383 kb on - strand at 378.398 kb on + strand at 378.427 kb on + strand at 378.427 kb on + strand at 378.435 kb on - strand at 378.887 kb on + strand, within BWI76_RS01855 at 378.895 kb on - strand, within BWI76_RS01855 at 379.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 376,547 - BWI76_RS01845 0.37 -1.3 376,708 + BWI76_RS01845 0.50 -0.3 376,708 + BWI76_RS01845 0.50 +0.4 376,733 - BWI76_RS01845 0.52 -1.1 376,786 + BWI76_RS01845 0.56 +0.7 376,932 + BWI76_RS01845 0.67 -0.3 377,030 + BWI76_RS01845 0.75 -1.0 377,195 - BWI76_RS01845 0.88 +0.0 377,487 + -1.3 377,608 + BWI76_RS01850 0.16 -0.7 377,782 - BWI76_RS01850 0.34 -3.2 377,998 + BWI76_RS01850 0.57 -0.3 377,998 + BWI76_RS01850 0.57 +0.1 377,998 + BWI76_RS01850 0.57 -0.4 378,006 - BWI76_RS01850 0.58 -0.1 378,093 + BWI76_RS01850 0.68 +0.6 378,108 + BWI76_RS01850 0.69 -0.1 378,383 - +1.3 378,398 + +0.1 378,427 + -2.9 378,427 + +1.6 378,435 - -0.1 378,887 + BWI76_RS01855 0.61 -0.4 378,895 - BWI76_RS01855 0.63 -1.0 379,069 + -0.3
Or see this region's nucleotide sequence