Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01820 and BWI76_RS01825 are separated by 14 nucleotides BWI76_RS01825 and BWI76_RS01830 are separated by 187 nucleotides
BWI76_RS01820: BWI76_RS01820 - maltose ABC transporter, permease component 2 (MalG) <small>(from data)</small>, at 370,662 to 371,552
_RS01820
BWI76_RS01825: BWI76_RS01825 - maltose ABC transporter, permease component 1 (MalF) <small>(from data)</small>, at 371,567 to 373,111
_RS01825
BWI76_RS01830: BWI76_RS01830 - maltose ABC transporter, substrate-binding component MalE <small>(from data)</small>, at 373,299 to 374,489
_RS01830
Position (kb) 371
372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 370.592 kb on + strand at 370.722 kb on + strand at 370.741 kb on + strand at 370.820 kb on + strand, within BWI76_RS01820 at 370.820 kb on + strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.835 kb on - strand, within BWI76_RS01820 at 370.859 kb on + strand, within BWI76_RS01820 at 370.937 kb on - strand, within BWI76_RS01820 at 371.116 kb on - strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.239 kb on + strand, within BWI76_RS01820 at 371.698 kb on + strand at 371.729 kb on - strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.892 kb on - strand, within BWI76_RS01825 at 372.135 kb on + strand, within BWI76_RS01825 at 372.203 kb on + strand, within BWI76_RS01825 at 372.211 kb on - strand, within BWI76_RS01825 at 372.259 kb on - strand, within BWI76_RS01825 at 372.349 kb on + strand, within BWI76_RS01825 at 372.361 kb on + strand, within BWI76_RS01825 at 372.452 kb on + strand, within BWI76_RS01825 at 372.661 kb on + strand, within BWI76_RS01825 at 372.833 kb on - strand, within BWI76_RS01825 at 372.837 kb on + strand at 372.883 kb on + strand, within BWI76_RS01825 at 372.920 kb on + strand, within BWI76_RS01825 at 373.023 kb on + strand at 373.023 kb on + strand at 373.026 kb on - strand at 373.147 kb on + strand at 373.151 kb on + strand at 373.230 kb on - strand at 373.261 kb on + strand at 373.329 kb on - strand at 373.371 kb on - strand at 373.512 kb on + strand, within BWI76_RS01830 at 373.643 kb on + strand, within BWI76_RS01830 at 373.681 kb on + strand, within BWI76_RS01830 at 373.684 kb on - strand, within BWI76_RS01830 at 373.716 kb on - strand, within BWI76_RS01830 at 373.860 kb on + strand, within BWI76_RS01830 at 373.969 kb on - strand, within BWI76_RS01830 at 373.978 kb on + strand, within BWI76_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 370,592 + +1.0 370,722 + -3.0 370,741 + +0.4 370,820 + BWI76_RS01820 0.18 +2.8 370,820 + BWI76_RS01820 0.18 +1.1 370,828 - BWI76_RS01820 0.19 +0.2 370,828 - BWI76_RS01820 0.19 +0.6 370,835 - BWI76_RS01820 0.19 +0.7 370,859 + BWI76_RS01820 0.22 +2.0 370,937 - BWI76_RS01820 0.31 +0.0 371,116 - BWI76_RS01820 0.51 +0.9 371,182 + BWI76_RS01820 0.58 +0.2 371,182 + BWI76_RS01820 0.58 +1.1 371,239 + BWI76_RS01820 0.65 +1.1 371,698 + +0.3 371,729 - BWI76_RS01825 0.10 +1.6 371,884 + BWI76_RS01825 0.21 +1.5 371,884 + BWI76_RS01825 0.21 +0.4 371,892 - BWI76_RS01825 0.21 -0.0 372,135 + BWI76_RS01825 0.37 -0.3 372,203 + BWI76_RS01825 0.41 +1.7 372,211 - BWI76_RS01825 0.42 +0.3 372,259 - BWI76_RS01825 0.45 +0.7 372,349 + BWI76_RS01825 0.51 +0.5 372,361 + BWI76_RS01825 0.51 -0.6 372,452 + BWI76_RS01825 0.57 -0.5 372,661 + BWI76_RS01825 0.71 +0.2 372,833 - BWI76_RS01825 0.82 -0.1 372,837 + +3.0 372,883 + BWI76_RS01825 0.85 +2.8 372,920 + BWI76_RS01825 0.88 +1.4 373,023 + -0.1 373,023 + +1.5 373,026 - -0.6 373,147 + +1.6 373,151 + +1.3 373,230 - +1.0 373,261 + +0.9 373,329 - +1.3 373,371 - -0.1 373,512 + BWI76_RS01830 0.18 +0.4 373,643 + BWI76_RS01830 0.29 -0.9 373,681 + BWI76_RS01830 0.32 -0.1 373,684 - BWI76_RS01830 0.32 +0.4 373,716 - BWI76_RS01830 0.35 -0.3 373,860 + BWI76_RS01830 0.47 -0.1 373,969 - BWI76_RS01830 0.56 +1.8 373,978 + BWI76_RS01830 0.57 -0.7
Or see this region's nucleotide sequence