Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01810 and BWI76_RS01815 are separated by 144 nucleotides BWI76_RS01815 and BWI76_RS01820 are separated by 191 nucleotides BWI76_RS01820 and BWI76_RS01825 are separated by 14 nucleotides
BWI76_RS01810: BWI76_RS01810 - N-acetyltransferase, at 369,406 to 369,915
_RS01810
BWI76_RS01815: BWI76_RS01815 - phosphate-starvation-inducible protein PsiE, at 370,060 to 370,470
_RS01815
BWI76_RS01820: BWI76_RS01820 - maltose ABC transporter, permease component 2 (MalG) <small>(from data)</small>, at 370,662 to 371,552
_RS01820
BWI76_RS01825: BWI76_RS01825 - maltose ABC transporter, permease component 1 (MalF) <small>(from data)</small>, at 371,567 to 373,111
_RS01825
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 369.689 kb on - strand, within BWI76_RS01810 at 369.809 kb on - strand, within BWI76_RS01810 at 369.841 kb on - strand, within BWI76_RS01810 at 369.884 kb on - strand at 370.020 kb on + strand at 370.044 kb on + strand at 370.210 kb on - strand, within BWI76_RS01815 at 370.322 kb on + strand, within BWI76_RS01815 at 370.398 kb on - strand, within BWI76_RS01815 at 370.592 kb on + strand at 370.722 kb on + strand at 370.741 kb on + strand at 370.820 kb on + strand, within BWI76_RS01820 at 370.820 kb on + strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.828 kb on - strand, within BWI76_RS01820 at 370.835 kb on - strand, within BWI76_RS01820 at 370.859 kb on + strand, within BWI76_RS01820 at 370.937 kb on - strand, within BWI76_RS01820 at 371.116 kb on - strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.182 kb on + strand, within BWI76_RS01820 at 371.239 kb on + strand, within BWI76_RS01820 at 371.698 kb on + strand at 371.729 kb on - strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.884 kb on + strand, within BWI76_RS01825 at 371.892 kb on - strand, within BWI76_RS01825 at 372.135 kb on + strand, within BWI76_RS01825 at 372.203 kb on + strand, within BWI76_RS01825 at 372.211 kb on - strand, within BWI76_RS01825 at 372.259 kb on - strand, within BWI76_RS01825 at 372.349 kb on + strand, within BWI76_RS01825 at 372.361 kb on + strand, within BWI76_RS01825 at 372.452 kb on + strand, within BWI76_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 369,689 - BWI76_RS01810 0.55 -3.4 369,809 - BWI76_RS01810 0.79 +0.2 369,841 - BWI76_RS01810 0.85 -0.7 369,884 - +0.1 370,020 + +1.2 370,044 + -0.0 370,210 - BWI76_RS01815 0.36 -1.6 370,322 + BWI76_RS01815 0.64 +0.7 370,398 - BWI76_RS01815 0.82 -1.1 370,592 + +1.0 370,722 + -3.0 370,741 + +0.4 370,820 + BWI76_RS01820 0.18 +2.8 370,820 + BWI76_RS01820 0.18 +1.1 370,828 - BWI76_RS01820 0.19 +0.2 370,828 - BWI76_RS01820 0.19 +0.6 370,835 - BWI76_RS01820 0.19 +0.7 370,859 + BWI76_RS01820 0.22 +2.0 370,937 - BWI76_RS01820 0.31 +0.0 371,116 - BWI76_RS01820 0.51 +0.9 371,182 + BWI76_RS01820 0.58 +0.2 371,182 + BWI76_RS01820 0.58 +1.1 371,239 + BWI76_RS01820 0.65 +1.1 371,698 + +0.3 371,729 - BWI76_RS01825 0.10 +1.6 371,884 + BWI76_RS01825 0.21 +1.5 371,884 + BWI76_RS01825 0.21 +0.4 371,892 - BWI76_RS01825 0.21 -0.0 372,135 + BWI76_RS01825 0.37 -0.3 372,203 + BWI76_RS01825 0.41 +1.7 372,211 - BWI76_RS01825 0.42 +0.3 372,259 - BWI76_RS01825 0.45 +0.7 372,349 + BWI76_RS01825 0.51 +0.5 372,361 + BWI76_RS01825 0.51 -0.6 372,452 + BWI76_RS01825 0.57 -0.5
Or see this region's nucleotide sequence