Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00705

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00700 and BWI76_RS00705 are separated by 291 nucleotidesBWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotidesBWI76_RS00710 and BWI76_RS00715 are separated by 91 nucleotides BWI76_RS00700: BWI76_RS00700 - rhamnose/proton symporter RhaT, at 142,745 to 143,779 _RS00700 BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691 _RS00705 BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437 _RS00710 BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902 _RS00715 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1at 143.140 kb on - strand, within BWI76_RS00700at 143.145 kb on + strand, within BWI76_RS00700at 143.153 kb on - strand, within BWI76_RS00700at 143.155 kb on + strand, within BWI76_RS00700at 143.163 kb on - strand, within BWI76_RS00700at 143.163 kb on - strand, within BWI76_RS00700at 143.243 kb on - strand, within BWI76_RS00700at 143.255 kb on - strand, within BWI76_RS00700at 143.305 kb on + strand, within BWI76_RS00700at 143.313 kb on - strand, within BWI76_RS00700at 143.324 kb on + strand, within BWI76_RS00700at 143.332 kb on - strand, within BWI76_RS00700at 143.390 kb on - strand, within BWI76_RS00700at 143.616 kb on - strand, within BWI76_RS00700at 143.673 kb on - strand, within BWI76_RS00700at 143.714 kb on + strandat 143.724 kb on + strandat 143.724 kb on + strandat 143.732 kb on - strandat 143.732 kb on - strandat 143.732 kb on - strandat 143.785 kb on - strandat 143.823 kb on + strandat 143.866 kb on - strandat 143.866 kb on - strandat 143.866 kb on - strandat 143.880 kb on + strandat 143.948 kb on + strandat 144.031 kb on + strandat 144.704 kb on - strandat 144.802 kb on - strandat 145.079 kb on + strand, within BWI76_RS00710at 145.087 kb on - strand, within BWI76_RS00710at 145.478 kb on + strandat 145.560 kb on + strandat 145.686 kb on - strand, within BWI76_RS00715

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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143,140 - BWI76_RS00700 0.38 +0.3
143,145 + BWI76_RS00700 0.39 +0.3
143,153 - BWI76_RS00700 0.39 -2.2
143,155 + BWI76_RS00700 0.40 -1.2
143,163 - BWI76_RS00700 0.40 -0.7
143,163 - BWI76_RS00700 0.40 +1.1
143,243 - BWI76_RS00700 0.48 +0.4
143,255 - BWI76_RS00700 0.49 +0.3
143,305 + BWI76_RS00700 0.54 -0.0
143,313 - BWI76_RS00700 0.55 -1.3
143,324 + BWI76_RS00700 0.56 -1.7
143,332 - BWI76_RS00700 0.57 +0.2
143,390 - BWI76_RS00700 0.62 -0.2
143,616 - BWI76_RS00700 0.84 +0.1
143,673 - BWI76_RS00700 0.90 +0.4
143,714 + -0.8
143,724 + +0.6
143,724 + +0.1
143,732 - +1.0
143,732 - +0.5
143,732 - -1.4
143,785 - -0.2
143,823 + +0.0
143,866 - +0.2
143,866 - +0.2
143,866 - +1.1
143,880 + +0.2
143,948 + -1.6
144,031 + +0.1
144,704 - +1.2
144,802 - -0.5
145,079 + BWI76_RS00710 0.47 -0.7
145,087 - BWI76_RS00710 0.48 -0.1
145,478 + +0.6
145,560 + +0.1
145,686 - BWI76_RS00715 0.11 +1.7

Or see this region's nucleotide sequence