Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00690 and BWI76_RS00695 are separated by 41 nucleotides BWI76_RS00695 and BWI76_RS00700 are separated by 5 nucleotides BWI76_RS00700 and BWI76_RS00705 are separated by 291 nucleotides BWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotides
BWI76_RS00690: BWI76_RS00690 - transcriptional activator RhaS, at 140,980 to 141,816
_RS00690
BWI76_RS00695: BWI76_RS00695 - AraC family transcriptional regulator, at 141,858 to 142,739
_RS00695
BWI76_RS00700: BWI76_RS00700 - rhamnose/proton symporter RhaT, at 142,745 to 143,779
_RS00700
BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691
_RS00705
BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437
_RS00710
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1 at 141.825 kb on - strand at 142.002 kb on - strand, within BWI76_RS00695 at 142.044 kb on - strand, within BWI76_RS00695 at 142.045 kb on + strand, within BWI76_RS00695 at 142.149 kb on + strand, within BWI76_RS00695 at 142.211 kb on + strand, within BWI76_RS00695 at 142.263 kb on - strand, within BWI76_RS00695 at 142.309 kb on + strand, within BWI76_RS00695 at 142.327 kb on - strand, within BWI76_RS00695 at 142.327 kb on - strand, within BWI76_RS00695 at 142.411 kb on + strand, within BWI76_RS00695 at 142.461 kb on - strand, within BWI76_RS00695 at 142.601 kb on + strand, within BWI76_RS00695 at 142.604 kb on - strand, within BWI76_RS00695 at 142.645 kb on + strand, within BWI76_RS00695 at 142.653 kb on - strand at 142.908 kb on - strand, within BWI76_RS00700 at 142.952 kb on - strand, within BWI76_RS00700 at 143.140 kb on - strand, within BWI76_RS00700 at 143.145 kb on + strand, within BWI76_RS00700 at 143.153 kb on - strand, within BWI76_RS00700 at 143.155 kb on + strand, within BWI76_RS00700 at 143.163 kb on - strand, within BWI76_RS00700 at 143.163 kb on - strand, within BWI76_RS00700 at 143.243 kb on - strand, within BWI76_RS00700 at 143.255 kb on - strand, within BWI76_RS00700 at 143.305 kb on + strand, within BWI76_RS00700 at 143.313 kb on - strand, within BWI76_RS00700 at 143.324 kb on + strand, within BWI76_RS00700 at 143.332 kb on - strand, within BWI76_RS00700 at 143.390 kb on - strand, within BWI76_RS00700 at 143.616 kb on - strand, within BWI76_RS00700 at 143.673 kb on - strand, within BWI76_RS00700 at 143.714 kb on + strand at 143.724 kb on + strand at 143.724 kb on + strand at 143.732 kb on - strand at 143.732 kb on - strand at 143.732 kb on - strand at 143.785 kb on - strand at 143.823 kb on + strand at 143.866 kb on - strand at 143.866 kb on - strand at 143.866 kb on - strand at 143.880 kb on + strand at 143.948 kb on + strand at 144.031 kb on + strand at 144.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 141,825 - +1.2 142,002 - BWI76_RS00695 0.16 -0.1 142,044 - BWI76_RS00695 0.21 +1.1 142,045 + BWI76_RS00695 0.21 +0.4 142,149 + BWI76_RS00695 0.33 +0.4 142,211 + BWI76_RS00695 0.40 +0.7 142,263 - BWI76_RS00695 0.46 -2.4 142,309 + BWI76_RS00695 0.51 +0.6 142,327 - BWI76_RS00695 0.53 -0.2 142,327 - BWI76_RS00695 0.53 -0.6 142,411 + BWI76_RS00695 0.63 +1.3 142,461 - BWI76_RS00695 0.68 +0.9 142,601 + BWI76_RS00695 0.84 +0.1 142,604 - BWI76_RS00695 0.85 +1.4 142,645 + BWI76_RS00695 0.89 -0.2 142,653 - +1.2 142,908 - BWI76_RS00700 0.16 -0.7 142,952 - BWI76_RS00700 0.20 +0.3 143,140 - BWI76_RS00700 0.38 +0.3 143,145 + BWI76_RS00700 0.39 +0.3 143,153 - BWI76_RS00700 0.39 -2.2 143,155 + BWI76_RS00700 0.40 -1.2 143,163 - BWI76_RS00700 0.40 -0.7 143,163 - BWI76_RS00700 0.40 +1.1 143,243 - BWI76_RS00700 0.48 +0.4 143,255 - BWI76_RS00700 0.49 +0.3 143,305 + BWI76_RS00700 0.54 -0.0 143,313 - BWI76_RS00700 0.55 -1.3 143,324 + BWI76_RS00700 0.56 -1.7 143,332 - BWI76_RS00700 0.57 +0.2 143,390 - BWI76_RS00700 0.62 -0.2 143,616 - BWI76_RS00700 0.84 +0.1 143,673 - BWI76_RS00700 0.90 +0.4 143,714 + -0.8 143,724 + +0.6 143,724 + +0.1 143,732 - +1.0 143,732 - +0.5 143,732 - -1.4 143,785 - -0.2 143,823 + +0.0 143,866 - +0.2 143,866 - +0.2 143,866 - +1.1 143,880 + +0.2 143,948 + -1.6 144,031 + +0.1 144,704 - +1.2
Or see this region's nucleotide sequence