Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00660 and BWI76_RS00665 are separated by 96 nucleotides BWI76_RS00665 and BWI76_RS00670 are separated by 82 nucleotides
BWI76_RS00660: BWI76_RS00660 - ABC transporter, at 134,301 to 135,812
_RS00660
BWI76_RS00665: BWI76_RS00665 - rhamnose ABC transporter substrate-binding protein, at 135,909 to 136,895
_RS00665
BWI76_RS00670: BWI76_RS00670 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) <small>(from data)</small>, at 136,978 to 137,808
_RS00670
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.975 kb on + strand, within BWI76_RS00660 at 135.066 kb on + strand, within BWI76_RS00660 at 135.149 kb on - strand, within BWI76_RS00660 at 135.151 kb on - strand at 135.207 kb on - strand, within BWI76_RS00660 at 135.360 kb on + strand, within BWI76_RS00660 at 135.436 kb on + strand, within BWI76_RS00660 at 135.563 kb on + strand, within BWI76_RS00660 at 135.596 kb on + strand, within BWI76_RS00660 at 135.641 kb on + strand, within BWI76_RS00660 at 135.649 kb on - strand, within BWI76_RS00660 at 135.766 kb on + strand at 135.834 kb on + strand at 135.844 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.880 kb on + strand at 135.886 kb on - strand at 135.905 kb on - strand at 136.080 kb on + strand, within BWI76_RS00665 at 136.270 kb on + strand, within BWI76_RS00665 at 136.272 kb on - strand, within BWI76_RS00665 at 136.348 kb on + strand, within BWI76_RS00665 at 136.387 kb on - strand, within BWI76_RS00665 at 136.409 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.571 kb on + strand, within BWI76_RS00665 at 136.579 kb on - strand, within BWI76_RS00665 at 136.696 kb on + strand, within BWI76_RS00665 at 136.715 kb on - strand, within BWI76_RS00665 at 136.997 kb on - strand at 136.997 kb on - strand at 137.015 kb on - strand at 137.016 kb on + strand at 137.072 kb on - strand, within BWI76_RS00670 at 137.148 kb on + strand, within BWI76_RS00670 at 137.324 kb on - strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.364 kb on - strand, within BWI76_RS00670 at 137.378 kb on - strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.535 kb on + strand, within BWI76_RS00670 at 137.640 kb on - strand, within BWI76_RS00670 at 137.770 kb on - strand at 137.778 kb on + strand at 137.808 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 134,975 + BWI76_RS00660 0.45 +0.4 135,066 + BWI76_RS00660 0.51 +1.9 135,149 - BWI76_RS00660 0.56 +0.4 135,151 - +1.0 135,207 - BWI76_RS00660 0.60 -0.4 135,360 + BWI76_RS00660 0.70 +0.1 135,436 + BWI76_RS00660 0.75 +1.6 135,563 + BWI76_RS00660 0.83 +2.6 135,596 + BWI76_RS00660 0.86 -1.3 135,641 + BWI76_RS00660 0.89 -1.8 135,649 - BWI76_RS00660 0.89 +0.5 135,766 + +0.1 135,834 + +2.4 135,844 + -0.1 135,878 + -0.1 135,878 + +1.8 135,878 + -1.1 135,880 + +0.6 135,886 - +0.6 135,905 - +0.5 136,080 + BWI76_RS00665 0.17 +0.6 136,270 + BWI76_RS00665 0.37 +0.2 136,272 - BWI76_RS00665 0.37 +0.6 136,348 + BWI76_RS00665 0.44 +0.2 136,387 - BWI76_RS00665 0.48 +0.3 136,409 - BWI76_RS00665 0.51 +0.1 136,525 - BWI76_RS00665 0.62 +0.7 136,525 - BWI76_RS00665 0.62 +0.7 136,571 + BWI76_RS00665 0.67 -0.4 136,579 - BWI76_RS00665 0.68 +0.7 136,696 + BWI76_RS00665 0.80 -0.4 136,715 - BWI76_RS00665 0.82 -1.5 136,997 - -0.4 136,997 - -1.3 137,015 - -1.1 137,016 + +1.6 137,072 - BWI76_RS00670 0.11 -0.9 137,148 + BWI76_RS00670 0.20 +0.3 137,324 - BWI76_RS00670 0.42 -0.0 137,356 + BWI76_RS00670 0.45 +0.4 137,356 + BWI76_RS00670 0.45 +1.0 137,364 - BWI76_RS00670 0.46 -1.0 137,378 - BWI76_RS00670 0.48 +1.4 137,457 + BWI76_RS00670 0.58 -0.1 137,457 + BWI76_RS00670 0.58 -0.4 137,535 + BWI76_RS00670 0.67 +1.1 137,640 - BWI76_RS00670 0.80 -1.6 137,770 - -1.4 137,778 + +0.5 137,808 - -0.1 137,846 - +0.4 137,846 - -0.8 137,846 - +0.3
Or see this region's nucleotide sequence