Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00655 and BWI76_RS00660 overlap by 1 nucleotides BWI76_RS00660 and BWI76_RS00665 are separated by 96 nucleotides
BWI76_RS00655: BWI76_RS00655 - inner-membrane translocator, at 133,297 to 134,301
_RS00655
BWI76_RS00660: BWI76_RS00660 - ABC transporter, at 134,301 to 135,812
_RS00660
BWI76_RS00665: BWI76_RS00665 - rhamnose ABC transporter substrate-binding protein, at 135,909 to 136,895
_RS00665
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 133.344 kb on + strand at 133.344 kb on + strand at 133.472 kb on - strand at 133.729 kb on + strand, within BWI76_RS00655 at 133.737 kb on - strand, within BWI76_RS00655 at 133.761 kb on + strand, within BWI76_RS00655 at 133.771 kb on - strand, within BWI76_RS00655 at 133.796 kb on + strand, within BWI76_RS00655 at 133.866 kb on - strand, within BWI76_RS00655 at 133.935 kb on - strand, within BWI76_RS00655 at 133.974 kb on - strand, within BWI76_RS00655 at 134.062 kb on - strand, within BWI76_RS00655 at 134.085 kb on + strand, within BWI76_RS00655 at 134.125 kb on - strand, within BWI76_RS00655 at 134.187 kb on + strand, within BWI76_RS00655 at 134.209 kb on + strand at 134.370 kb on + strand at 134.485 kb on + strand, within BWI76_RS00660 at 134.488 kb on - strand, within BWI76_RS00660 at 134.896 kb on + strand, within BWI76_RS00660 at 134.975 kb on + strand, within BWI76_RS00660 at 135.066 kb on + strand, within BWI76_RS00660 at 135.149 kb on - strand, within BWI76_RS00660 at 135.151 kb on - strand at 135.207 kb on - strand, within BWI76_RS00660 at 135.360 kb on + strand, within BWI76_RS00660 at 135.436 kb on + strand, within BWI76_RS00660 at 135.563 kb on + strand, within BWI76_RS00660 at 135.596 kb on + strand, within BWI76_RS00660 at 135.641 kb on + strand, within BWI76_RS00660 at 135.649 kb on - strand, within BWI76_RS00660 at 135.766 kb on + strand at 135.834 kb on + strand at 135.844 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.880 kb on + strand at 135.886 kb on - strand at 135.905 kb on - strand at 136.080 kb on + strand, within BWI76_RS00665 at 136.270 kb on + strand, within BWI76_RS00665 at 136.272 kb on - strand, within BWI76_RS00665 at 136.348 kb on + strand, within BWI76_RS00665 at 136.387 kb on - strand, within BWI76_RS00665 at 136.409 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.571 kb on + strand, within BWI76_RS00665 at 136.579 kb on - strand, within BWI76_RS00665 at 136.696 kb on + strand, within BWI76_RS00665 at 136.715 kb on - strand, within BWI76_RS00665
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 133,344 + -0.2 133,344 + -0.0 133,472 - -0.4 133,729 + BWI76_RS00655 0.43 -1.0 133,737 - BWI76_RS00655 0.44 -0.1 133,761 + BWI76_RS00655 0.46 +0.3 133,771 - BWI76_RS00655 0.47 -2.5 133,796 + BWI76_RS00655 0.50 +0.4 133,866 - BWI76_RS00655 0.57 +1.0 133,935 - BWI76_RS00655 0.63 -0.3 133,974 - BWI76_RS00655 0.67 +0.6 134,062 - BWI76_RS00655 0.76 +0.5 134,085 + BWI76_RS00655 0.78 +0.6 134,125 - BWI76_RS00655 0.82 +2.9 134,187 + BWI76_RS00655 0.89 -0.1 134,209 + -0.2 134,370 + -0.8 134,485 + BWI76_RS00660 0.12 -2.6 134,488 - BWI76_RS00660 0.12 +0.4 134,896 + BWI76_RS00660 0.39 -1.9 134,975 + BWI76_RS00660 0.45 +0.4 135,066 + BWI76_RS00660 0.51 +1.9 135,149 - BWI76_RS00660 0.56 +0.4 135,151 - +1.0 135,207 - BWI76_RS00660 0.60 -0.4 135,360 + BWI76_RS00660 0.70 +0.1 135,436 + BWI76_RS00660 0.75 +1.6 135,563 + BWI76_RS00660 0.83 +2.6 135,596 + BWI76_RS00660 0.86 -1.3 135,641 + BWI76_RS00660 0.89 -1.8 135,649 - BWI76_RS00660 0.89 +0.5 135,766 + +0.1 135,834 + +2.4 135,844 + -0.1 135,878 + -0.1 135,878 + +1.8 135,878 + -1.1 135,880 + +0.6 135,886 - +0.6 135,905 - +0.5 136,080 + BWI76_RS00665 0.17 +0.6 136,270 + BWI76_RS00665 0.37 +0.2 136,272 - BWI76_RS00665 0.37 +0.6 136,348 + BWI76_RS00665 0.44 +0.2 136,387 - BWI76_RS00665 0.48 +0.3 136,409 - BWI76_RS00665 0.51 +0.1 136,525 - BWI76_RS00665 0.62 +0.7 136,525 - BWI76_RS00665 0.62 +0.7 136,571 + BWI76_RS00665 0.67 -0.4 136,579 - BWI76_RS00665 0.68 +0.7 136,696 + BWI76_RS00665 0.80 -0.4 136,715 - BWI76_RS00665 0.82 -1.5
Or see this region's nucleotide sequence