Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00645 and BWI76_RS00650 are separated by 148 nucleotides BWI76_RS00650 and BWI76_RS00655 overlap by 4 nucleotides
BWI76_RS00645: BWI76_RS00645 - lactaldehyde reductase, at 130,999 to 132,147
_RS00645
BWI76_RS00650: BWI76_RS00650 - rhamnose ABC transporter permease component, at 132,296 to 133,300
_RS00650
BWI76_RS00655: BWI76_RS00655 - inner-membrane translocator, at 133,297 to 134,301
_RS00655
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 131.386 kb on + strand, within BWI76_RS00645 at 131.386 kb on + strand, within BWI76_RS00645 at 131.394 kb on - strand, within BWI76_RS00645 at 131.512 kb on - strand, within BWI76_RS00645 at 131.555 kb on - strand, within BWI76_RS00645 at 131.563 kb on - strand, within BWI76_RS00645 at 131.674 kb on + strand, within BWI76_RS00645 at 131.792 kb on - strand, within BWI76_RS00645 at 131.945 kb on - strand, within BWI76_RS00645 at 132.025 kb on - strand, within BWI76_RS00645 at 132.136 kb on + strand at 132.186 kb on + strand at 132.266 kb on - strand at 132.523 kb on + strand, within BWI76_RS00650 at 132.619 kb on + strand, within BWI76_RS00650 at 132.684 kb on + strand, within BWI76_RS00650 at 132.786 kb on - strand, within BWI76_RS00650 at 132.791 kb on - strand, within BWI76_RS00650 at 132.832 kb on + strand, within BWI76_RS00650 at 132.897 kb on + strand, within BWI76_RS00650 at 132.907 kb on + strand, within BWI76_RS00650 at 132.947 kb on + strand, within BWI76_RS00650 at 133.029 kb on - strand, within BWI76_RS00650 at 133.229 kb on - strand at 133.229 kb on - strand at 133.284 kb on - strand at 133.344 kb on + strand at 133.344 kb on + strand at 133.472 kb on - strand at 133.729 kb on + strand, within BWI76_RS00655 at 133.737 kb on - strand, within BWI76_RS00655 at 133.761 kb on + strand, within BWI76_RS00655 at 133.771 kb on - strand, within BWI76_RS00655 at 133.796 kb on + strand, within BWI76_RS00655 at 133.866 kb on - strand, within BWI76_RS00655 at 133.935 kb on - strand, within BWI76_RS00655 at 133.974 kb on - strand, within BWI76_RS00655 at 134.062 kb on - strand, within BWI76_RS00655 at 134.085 kb on + strand, within BWI76_RS00655 at 134.125 kb on - strand, within BWI76_RS00655 at 134.187 kb on + strand, within BWI76_RS00655 at 134.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 131,386 + BWI76_RS00645 0.34 +2.3 131,386 + BWI76_RS00645 0.34 +0.5 131,394 - BWI76_RS00645 0.34 -0.3 131,512 - BWI76_RS00645 0.45 +0.0 131,555 - BWI76_RS00645 0.48 -0.4 131,563 - BWI76_RS00645 0.49 -0.4 131,674 + BWI76_RS00645 0.59 -1.4 131,792 - BWI76_RS00645 0.69 +1.4 131,945 - BWI76_RS00645 0.82 -1.1 132,025 - BWI76_RS00645 0.89 -1.5 132,136 + -0.7 132,186 + -1.0 132,266 - +1.2 132,523 + BWI76_RS00650 0.23 +0.9 132,619 + BWI76_RS00650 0.32 +0.4 132,684 + BWI76_RS00650 0.39 +0.9 132,786 - BWI76_RS00650 0.49 +0.4 132,791 - BWI76_RS00650 0.49 +0.7 132,832 + BWI76_RS00650 0.53 -0.5 132,897 + BWI76_RS00650 0.60 -0.3 132,907 + BWI76_RS00650 0.61 -0.7 132,947 + BWI76_RS00650 0.65 +0.7 133,029 - BWI76_RS00650 0.73 -0.6 133,229 - +0.5 133,229 - +0.1 133,284 - +0.6 133,344 + -0.2 133,344 + -0.0 133,472 - -0.4 133,729 + BWI76_RS00655 0.43 -1.0 133,737 - BWI76_RS00655 0.44 -0.1 133,761 + BWI76_RS00655 0.46 +0.3 133,771 - BWI76_RS00655 0.47 -2.5 133,796 + BWI76_RS00655 0.50 +0.4 133,866 - BWI76_RS00655 0.57 +1.0 133,935 - BWI76_RS00655 0.63 -0.3 133,974 - BWI76_RS00655 0.67 +0.6 134,062 - BWI76_RS00655 0.76 +0.5 134,085 + BWI76_RS00655 0.78 +0.6 134,125 - BWI76_RS00655 0.82 +2.9 134,187 + BWI76_RS00655 0.89 -0.1 134,209 + -0.2
Or see this region's nucleotide sequence