Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00465 and BWI76_RS00470 are separated by 48 nucleotides BWI76_RS00470 and BWI76_RS00475 are separated by 156 nucleotides
BWI76_RS00465: BWI76_RS00465 - formate dehydrogenase-N subunit alpha, at 94,761 to 97,175
_RS00465
BWI76_RS00470: BWI76_RS00470 - sulfate ABC transporter substrate-binding protein, at 97,224 to 97,811
_RS00470
BWI76_RS00475: BWI76_RS00475 - sulfurtransferase FdhD, at 97,968 to 98,804
_RS00475
Position (kb) 97
98 Strain fitness (log2 ratio) -1
0
1
2
3 at 96.456 kb on - strand, within BWI76_RS00465 at 96.574 kb on + strand, within BWI76_RS00465 at 96.574 kb on + strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.582 kb on - strand, within BWI76_RS00465 at 96.604 kb on + strand, within BWI76_RS00465 at 96.813 kb on - strand, within BWI76_RS00465 at 96.861 kb on + strand, within BWI76_RS00465 at 97.211 kb on + strand at 97.222 kb on + strand at 97.349 kb on + strand, within BWI76_RS00470 at 97.406 kb on + strand, within BWI76_RS00470 at 97.492 kb on - strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.529 kb on + strand, within BWI76_RS00470 at 97.534 kb on + strand, within BWI76_RS00470 at 97.537 kb on - strand, within BWI76_RS00470 at 97.637 kb on + strand, within BWI76_RS00470 at 97.660 kb on + strand, within BWI76_RS00470 at 97.668 kb on - strand, within BWI76_RS00470 at 97.668 kb on - strand, within BWI76_RS00470 at 97.701 kb on - strand, within BWI76_RS00470 at 97.737 kb on + strand, within BWI76_RS00470 at 97.774 kb on + strand at 97.793 kb on + strand at 97.806 kb on - strand at 97.882 kb on - strand at 97.944 kb on - strand at 98.110 kb on - strand, within BWI76_RS00475 at 98.237 kb on - strand, within BWI76_RS00475 at 98.312 kb on + strand, within BWI76_RS00475 at 98.315 kb on - strand, within BWI76_RS00475 at 98.386 kb on + strand, within BWI76_RS00475 at 98.443 kb on + strand, within BWI76_RS00475 at 98.499 kb on - strand, within BWI76_RS00475 at 98.529 kb on - strand, within BWI76_RS00475 at 98.560 kb on - strand, within BWI76_RS00475 at 98.561 kb on - strand, within BWI76_RS00475 at 98.652 kb on + strand, within BWI76_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 96,456 - BWI76_RS00465 0.70 +1.3 96,574 + BWI76_RS00465 0.75 +1.6 96,574 + BWI76_RS00465 0.75 +2.4 96,582 - BWI76_RS00465 0.75 +1.3 96,582 - BWI76_RS00465 0.75 +1.0 96,582 - BWI76_RS00465 0.75 +0.3 96,604 + BWI76_RS00465 0.76 +1.9 96,813 - BWI76_RS00465 0.85 +1.7 96,861 + BWI76_RS00465 0.87 -1.2 97,211 + +1.3 97,222 + +0.2 97,349 + BWI76_RS00470 0.21 +1.2 97,406 + BWI76_RS00470 0.31 +1.2 97,492 - BWI76_RS00470 0.46 +1.6 97,529 + BWI76_RS00470 0.52 +0.6 97,529 + BWI76_RS00470 0.52 +1.7 97,529 + BWI76_RS00470 0.52 +1.7 97,529 + BWI76_RS00470 0.52 +2.3 97,534 + BWI76_RS00470 0.53 +1.0 97,537 - BWI76_RS00470 0.53 +1.0 97,637 + BWI76_RS00470 0.70 +1.0 97,660 + BWI76_RS00470 0.74 -0.6 97,668 - BWI76_RS00470 0.76 +1.8 97,668 - BWI76_RS00470 0.76 +1.3 97,701 - BWI76_RS00470 0.81 +1.2 97,737 + BWI76_RS00470 0.87 +0.9 97,774 + +0.2 97,793 + +0.4 97,806 - +3.0 97,882 - +0.6 97,944 - +1.1 98,110 - BWI76_RS00475 0.17 +0.1 98,237 - BWI76_RS00475 0.32 +0.9 98,312 + BWI76_RS00475 0.41 +1.6 98,315 - BWI76_RS00475 0.41 +0.3 98,386 + BWI76_RS00475 0.50 -0.3 98,443 + BWI76_RS00475 0.57 +0.2 98,499 - BWI76_RS00475 0.63 +0.7 98,529 - BWI76_RS00475 0.67 +1.1 98,560 - BWI76_RS00475 0.71 +0.2 98,561 - BWI76_RS00475 0.71 -1.4 98,652 + BWI76_RS00475 0.82 +0.5
Or see this region's nucleotide sequence