Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00145

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00140 and BWI76_RS00145 are separated by 49 nucleotidesBWI76_RS00145 and BWI76_RS00150 are separated by 47 nucleotidesBWI76_RS00150 and BWI76_RS00155 overlap by 1 nucleotides BWI76_RS00140: BWI76_RS00140 - phosphate transport system regulator PhoU, at 27,190 to 27,915 _RS00140 BWI76_RS00145: BWI76_RS00145 - phosphate ABC transporter ATP-binding protein, at 27,965 to 28,738 _RS00145 BWI76_RS00150: BWI76_RS00150 - phosphate transporter permease subunit PtsA, at 28,786 to 29,676 _RS00150 BWI76_RS00155: BWI76_RS00155 - phosphate transporter permease subunit PstC, at 29,676 to 30,635 _RS00155 Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 26.969 kb on - strandat 26.970 kb on + strandat 26.978 kb on - strandat 26.980 kb on + strandat 26.980 kb on + strandat 26.988 kb on - strandat 26.988 kb on - strandat 26.988 kb on - strandat 26.988 kb on - strandat 27.001 kb on - strandat 27.015 kb on - strandat 27.022 kb on - strandat 27.025 kb on - strandat 27.037 kb on + strandat 27.044 kb on - strandat 27.045 kb on - strandat 27.045 kb on - strandat 27.103 kb on + strandat 27.204 kb on + strandat 27.218 kb on + strandat 27.226 kb on - strandat 27.226 kb on - strandat 27.261 kb on - strandat 27.261 kb on - strandat 27.261 kb on - strandat 27.261 kb on - strandat 27.261 kb on - strandat 27.268 kb on - strand, within BWI76_RS00140at 29.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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26,969 - +0.1
26,970 + +0.2
26,978 - -1.7
26,980 + -0.7
26,980 + +0.6
26,988 - +1.0
26,988 - +1.4
26,988 - -0.4
26,988 - +0.1
27,001 - -1.6
27,015 - -0.4
27,022 - -1.3
27,025 - +0.4
27,037 + -0.2
27,044 - +1.2
27,045 - -0.2
27,045 - -0.3
27,103 + -3.2
27,204 + +3.0
27,218 + +1.4
27,226 - +1.5
27,226 - -4.7
27,261 - +0.5
27,261 - -2.8
27,261 - -0.9
27,261 - -3.0
27,261 - -3.1
27,268 - BWI76_RS00140 0.11 -1.7
29,661 - -0.6

Or see this region's nucleotide sequence