Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00140 and BWI76_RS00145 are separated by 49 nucleotides BWI76_RS00145 and BWI76_RS00150 are separated by 47 nucleotides BWI76_RS00150 and BWI76_RS00155 overlap by 1 nucleotides
BWI76_RS00140: BWI76_RS00140 - phosphate transport system regulator PhoU, at 27,190 to 27,915
_RS00140
BWI76_RS00145: BWI76_RS00145 - phosphate ABC transporter ATP-binding protein, at 27,965 to 28,738
_RS00145
BWI76_RS00150: BWI76_RS00150 - phosphate transporter permease subunit PtsA, at 28,786 to 29,676
_RS00150
BWI76_RS00155: BWI76_RS00155 - phosphate transporter permease subunit PstC, at 29,676 to 30,635
_RS00155
Position (kb) 27
28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 26.969 kb on - strand at 26.970 kb on + strand at 26.978 kb on - strand at 26.980 kb on + strand at 26.980 kb on + strand at 26.988 kb on - strand at 26.988 kb on - strand at 26.988 kb on - strand at 26.988 kb on - strand at 27.001 kb on - strand at 27.015 kb on - strand at 27.022 kb on - strand at 27.025 kb on - strand at 27.037 kb on + strand at 27.044 kb on - strand at 27.045 kb on - strand at 27.045 kb on - strand at 27.103 kb on + strand at 27.204 kb on + strand at 27.218 kb on + strand at 27.226 kb on - strand at 27.226 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.261 kb on - strand at 27.268 kb on - strand, within BWI76_RS00140 at 29.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 26,969 - +0.1 26,970 + +0.2 26,978 - -1.7 26,980 + -0.7 26,980 + +0.6 26,988 - +1.0 26,988 - +1.4 26,988 - -0.4 26,988 - +0.1 27,001 - -1.6 27,015 - -0.4 27,022 - -1.3 27,025 - +0.4 27,037 + -0.2 27,044 - +1.2 27,045 - -0.2 27,045 - -0.3 27,103 + -3.2 27,204 + +3.0 27,218 + +1.4 27,226 - +1.5 27,226 - -4.7 27,261 - +0.5 27,261 - -2.8 27,261 - -0.9 27,261 - -3.0 27,261 - -3.1 27,268 - BWI76_RS00140 0.11 -1.7 29,661 - -0.6
Or see this region's nucleotide sequence