Experiment: chicken 2; day 6; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13500 and BBR_RS13505 are separated by 207 nucleotides BBR_RS13505 and BBR_RS13510 are separated by 17 nucleotides BBR_RS13510 and BBR_RS13515 are separated by 114 nucleotides
BBR_RS13500: BBR_RS13500 - elongation factor Tu, at 802,313 to 803,512
_RS13500
BBR_RS13505: BBR_RS13505 - DUF4391 domain-containing protein, at 803,720 to 804,451
_RS13505
BBR_RS13510: BBR_RS13510 - LysR family transcriptional regulator, at 804,469 to 805,284
_RS13510
BBR_RS13515: BBR_RS13515 - putative sulfate exporter family transporter, at 805,399 to 806,463
_RS13515
Position (kb) 804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 803.677 kb on - strand at 803.677 kb on - strand at 803.677 kb on - strand at 803.883 kb on + strand, within BBR_RS13505 at 803.934 kb on - strand, within BBR_RS13505 at 803.934 kb on - strand, within BBR_RS13505 at 803.981 kb on - strand, within BBR_RS13505 at 804.005 kb on + strand, within BBR_RS13505 at 804.120 kb on + strand, within BBR_RS13505 at 804.130 kb on + strand, within BBR_RS13505 at 804.150 kb on + strand, within BBR_RS13505 at 804.206 kb on + strand, within BBR_RS13505 at 804.206 kb on + strand, within BBR_RS13505 at 804.439 kb on - strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.454 kb on - strand at 804.454 kb on - strand at 804.459 kb on + strand at 804.467 kb on - strand at 804.488 kb on - strand at 804.499 kb on + strand at 804.506 kb on + strand at 804.509 kb on - strand at 804.516 kb on + strand at 804.516 kb on + strand at 804.596 kb on + strand, within BBR_RS13510 at 804.599 kb on - strand, within BBR_RS13510 at 804.630 kb on + strand, within BBR_RS13510 at 804.653 kb on - strand, within BBR_RS13510 at 804.783 kb on - strand, within BBR_RS13510 at 804.876 kb on + strand, within BBR_RS13510 at 804.876 kb on + strand, within BBR_RS13510 at 804.884 kb on - strand, within BBR_RS13510 at 804.889 kb on + strand, within BBR_RS13510 at 804.935 kb on + strand, within BBR_RS13510 at 804.935 kb on + strand, within BBR_RS13510 at 804.935 kb on + strand, within BBR_RS13510 at 804.943 kb on - strand, within BBR_RS13510 at 804.943 kb on - strand, within BBR_RS13510 at 804.943 kb on - strand, within BBR_RS13510 at 804.954 kb on - strand, within BBR_RS13510 at 804.956 kb on + strand, within BBR_RS13510 at 804.991 kb on - strand, within BBR_RS13510 at 805.007 kb on + strand, within BBR_RS13510 at 805.007 kb on + strand, within BBR_RS13510 at 805.028 kb on - strand, within BBR_RS13510 at 805.056 kb on - strand, within BBR_RS13510 at 805.061 kb on - strand, within BBR_RS13510 at 805.078 kb on - strand, within BBR_RS13510 at 805.080 kb on + strand, within BBR_RS13510 at 805.126 kb on - strand, within BBR_RS13510 at 805.126 kb on - strand, within BBR_RS13510 at 805.152 kb on + strand, within BBR_RS13510 at 805.152 kb on + strand, within BBR_RS13510 at 805.154 kb on + strand, within BBR_RS13510 at 805.162 kb on - strand, within BBR_RS13510 at 805.228 kb on - strand at 805.309 kb on - strand at 805.441 kb on + strand at 805.603 kb on - strand, within BBR_RS13515 at 805.613 kb on + strand, within BBR_RS13515 at 805.667 kb on + strand, within BBR_RS13515 at 805.700 kb on - strand, within BBR_RS13515 at 805.702 kb on + strand, within BBR_RS13515 at 805.716 kb on + strand, within BBR_RS13515 at 805.716 kb on + strand, within BBR_RS13515 at 805.770 kb on + strand, within BBR_RS13515 at 805.775 kb on + strand, within BBR_RS13515 at 805.778 kb on - strand, within BBR_RS13515 at 805.791 kb on + strand, within BBR_RS13515 at 805.804 kb on - strand, within BBR_RS13515 at 805.824 kb on - strand, within BBR_RS13515 at 805.824 kb on - strand, within BBR_RS13515 at 805.824 kb on - strand, within BBR_RS13515 at 805.864 kb on + strand, within BBR_RS13515 at 805.872 kb on - strand, within BBR_RS13515 at 805.931 kb on - strand, within BBR_RS13515 at 805.956 kb on - strand, within BBR_RS13515 at 805.969 kb on + strand, within BBR_RS13515 at 805.969 kb on + strand, within BBR_RS13515 at 806.016 kb on + strand, within BBR_RS13515 at 806.027 kb on - strand, within BBR_RS13515 at 806.027 kb on - strand, within BBR_RS13515 at 806.078 kb on + strand, within BBR_RS13515 at 806.092 kb on - strand, within BBR_RS13515 at 806.120 kb on - strand, within BBR_RS13515 at 806.177 kb on + strand, within BBR_RS13515 at 806.182 kb on + strand, within BBR_RS13515 at 806.187 kb on + strand, within BBR_RS13515 at 806.242 kb on - strand, within BBR_RS13515 at 806.253 kb on + strand, within BBR_RS13515
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 6; diet=StandardDiet; sample=FecalPellet remove 803,677 - -0.5 803,677 - +2.5 803,677 - -2.5 803,883 + BBR_RS13505 0.22 -2.6 803,934 - BBR_RS13505 0.29 +1.4 803,934 - BBR_RS13505 0.29 +0.8 803,981 - BBR_RS13505 0.36 +0.9 804,005 + BBR_RS13505 0.39 -2.4 804,120 + BBR_RS13505 0.55 +1.8 804,130 + BBR_RS13505 0.56 +0.4 804,150 + BBR_RS13505 0.59 +1.8 804,206 + BBR_RS13505 0.66 +3.4 804,206 + BBR_RS13505 0.66 +2.1 804,439 - +2.2 804,446 + -1.4 804,446 + +0.2 804,446 + -1.0 804,446 + -2.5 804,446 + +0.3 804,446 + +0.1 804,446 + +0.4 804,454 - +2.5 804,454 - +0.5 804,459 + -1.0 804,467 - +1.4 804,488 - +0.5 804,499 + +0.5 804,506 + +2.3 804,509 - +2.1 804,516 + +1.5 804,516 + +0.5 804,596 + BBR_RS13510 0.16 +2.8 804,599 - BBR_RS13510 0.16 +3.1 804,630 + BBR_RS13510 0.20 +1.5 804,653 - BBR_RS13510 0.23 +3.5 804,783 - BBR_RS13510 0.38 +0.4 804,876 + BBR_RS13510 0.50 -0.7 804,876 + BBR_RS13510 0.50 +3.3 804,884 - BBR_RS13510 0.51 +2.7 804,889 + BBR_RS13510 0.51 +2.1 804,935 + BBR_RS13510 0.57 -0.3 804,935 + BBR_RS13510 0.57 +2.0 804,935 + BBR_RS13510 0.57 +2.1 804,943 - BBR_RS13510 0.58 +2.3 804,943 - BBR_RS13510 0.58 +2.3 804,943 - BBR_RS13510 0.58 -0.5 804,954 - BBR_RS13510 0.59 +2.8 804,956 + BBR_RS13510 0.60 +2.8 804,991 - BBR_RS13510 0.64 -0.3 805,007 + BBR_RS13510 0.66 +2.8 805,007 + BBR_RS13510 0.66 +0.8 805,028 - BBR_RS13510 0.69 +1.5 805,056 - BBR_RS13510 0.72 +4.0 805,061 - BBR_RS13510 0.73 +3.0 805,078 - BBR_RS13510 0.75 -0.9 805,080 + BBR_RS13510 0.75 +3.0 805,126 - BBR_RS13510 0.81 +0.6 805,126 - BBR_RS13510 0.81 +2.8 805,152 + BBR_RS13510 0.84 +3.5 805,152 + BBR_RS13510 0.84 +3.3 805,154 + BBR_RS13510 0.84 +2.1 805,162 - BBR_RS13510 0.85 +2.5 805,228 - +1.7 805,309 - +0.1 805,441 + +3.5 805,603 - BBR_RS13515 0.19 +1.5 805,613 + BBR_RS13515 0.20 +1.2 805,667 + BBR_RS13515 0.25 +0.5 805,700 - BBR_RS13515 0.28 +3.6 805,702 + BBR_RS13515 0.28 +1.7 805,716 + BBR_RS13515 0.30 +1.6 805,716 + BBR_RS13515 0.30 +3.1 805,770 + BBR_RS13515 0.35 +1.5 805,775 + BBR_RS13515 0.35 +4.4 805,778 - BBR_RS13515 0.36 +3.2 805,791 + BBR_RS13515 0.37 +3.2 805,804 - BBR_RS13515 0.38 +2.5 805,824 - BBR_RS13515 0.40 +1.9 805,824 - BBR_RS13515 0.40 -0.7 805,824 - BBR_RS13515 0.40 +2.9 805,864 + BBR_RS13515 0.44 +2.9 805,872 - BBR_RS13515 0.44 +0.6 805,931 - BBR_RS13515 0.50 +2.2 805,956 - BBR_RS13515 0.52 -0.4 805,969 + BBR_RS13515 0.54 -0.2 805,969 + BBR_RS13515 0.54 +2.2 806,016 + BBR_RS13515 0.58 +1.4 806,027 - BBR_RS13515 0.59 -0.9 806,027 - BBR_RS13515 0.59 +1.3 806,078 + BBR_RS13515 0.64 +1.6 806,092 - BBR_RS13515 0.65 +1.7 806,120 - BBR_RS13515 0.68 +1.2 806,177 + BBR_RS13515 0.73 +2.0 806,182 + BBR_RS13515 0.74 +2.2 806,187 + BBR_RS13515 0.74 +1.5 806,242 - BBR_RS13515 0.79 +1.5 806,253 + BBR_RS13515 0.80 -1.1
Or see this region's nucleotide sequence