Experiment: chicken 2; day 6; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13425 and BBR_RS13430 are separated by 83 nucleotides BBR_RS13430 and BBR_RS13435 overlap by 4 nucleotides BBR_RS13435 and BBR_RS13440 overlap by 28 nucleotides
BBR_RS13425: BBR_RS13425 - hypothetical protein, at 782,393 to 783,205
_RS13425
BBR_RS13430: BBR_RS13430 - hypothetical protein, at 783,289 to 783,948
_RS13430
BBR_RS13435: BBR_RS13435 - hypothetical protein, at 783,945 to 785,315
_RS13435
BBR_RS13440: BBR_RS13440 - alpha/beta hydrolase, at 785,288 to 786,625
_RS13440
Position (kb) 783
784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 782.978 kb on + strand, within BBR_RS13425 at 782.989 kb on - strand, within BBR_RS13425 at 783.079 kb on - strand, within BBR_RS13425 at 783.089 kb on + strand, within BBR_RS13425 at 783.094 kb on + strand, within BBR_RS13425 at 783.106 kb on + strand, within BBR_RS13425 at 783.166 kb on + strand at 783.174 kb on - strand at 783.180 kb on - strand at 783.180 kb on - strand at 783.187 kb on + strand at 783.199 kb on + strand at 783.199 kb on + strand at 783.258 kb on - strand at 783.385 kb on - strand, within BBR_RS13430 at 783.391 kb on - strand, within BBR_RS13430 at 783.428 kb on - strand, within BBR_RS13430 at 783.434 kb on + strand, within BBR_RS13430 at 783.444 kb on - strand, within BBR_RS13430 at 783.488 kb on + strand, within BBR_RS13430 at 783.488 kb on + strand, within BBR_RS13430 at 783.497 kb on - strand, within BBR_RS13430 at 783.513 kb on + strand, within BBR_RS13430 at 783.530 kb on + strand, within BBR_RS13430 at 783.533 kb on - strand, within BBR_RS13430 at 783.544 kb on + strand, within BBR_RS13430 at 783.544 kb on + strand, within BBR_RS13430 at 783.580 kb on - strand, within BBR_RS13430 at 783.593 kb on + strand, within BBR_RS13430 at 783.595 kb on + strand, within BBR_RS13430 at 783.598 kb on + strand, within BBR_RS13430 at 783.601 kb on - strand, within BBR_RS13430 at 783.601 kb on - strand, within BBR_RS13430 at 783.605 kb on + strand, within BBR_RS13430 at 783.700 kb on - strand, within BBR_RS13430 at 783.700 kb on - strand, within BBR_RS13430 at 783.751 kb on + strand, within BBR_RS13430 at 783.840 kb on - strand, within BBR_RS13430 at 783.857 kb on + strand, within BBR_RS13430 at 783.900 kb on + strand at 783.900 kb on + strand at 783.942 kb on + strand at 783.942 kb on + strand at 783.960 kb on + strand at 784.007 kb on + strand at 784.009 kb on - strand at 784.090 kb on + strand, within BBR_RS13435 at 784.174 kb on - strand, within BBR_RS13435 at 784.187 kb on + strand, within BBR_RS13435 at 784.195 kb on - strand, within BBR_RS13435 at 784.243 kb on + strand, within BBR_RS13435 at 784.243 kb on + strand, within BBR_RS13435 at 784.248 kb on + strand, within BBR_RS13435 at 784.253 kb on + strand, within BBR_RS13435 at 784.256 kb on - strand, within BBR_RS13435 at 784.256 kb on - strand, within BBR_RS13435 at 784.256 kb on - strand, within BBR_RS13435 at 784.263 kb on - strand, within BBR_RS13435 at 784.310 kb on - strand, within BBR_RS13435 at 784.355 kb on + strand, within BBR_RS13435 at 784.364 kb on - strand, within BBR_RS13435 at 784.378 kb on - strand, within BBR_RS13435 at 784.422 kb on - strand, within BBR_RS13435 at 784.427 kb on - strand, within BBR_RS13435 at 784.431 kb on + strand, within BBR_RS13435 at 784.494 kb on + strand, within BBR_RS13435 at 784.502 kb on - strand, within BBR_RS13435 at 784.502 kb on - strand, within BBR_RS13435 at 784.502 kb on - strand, within BBR_RS13435 at 784.632 kb on + strand, within BBR_RS13435 at 784.658 kb on + strand, within BBR_RS13435 at 784.658 kb on + strand, within BBR_RS13435 at 784.664 kb on - strand, within BBR_RS13435 at 784.673 kb on + strand, within BBR_RS13435 at 784.698 kb on + strand, within BBR_RS13435 at 784.698 kb on + strand, within BBR_RS13435 at 784.706 kb on - strand, within BBR_RS13435 at 784.708 kb on + strand, within BBR_RS13435 at 784.845 kb on + strand, within BBR_RS13435 at 784.870 kb on - strand, within BBR_RS13435 at 784.872 kb on + strand, within BBR_RS13435 at 784.906 kb on - strand, within BBR_RS13435 at 784.915 kb on + strand, within BBR_RS13435 at 784.915 kb on + strand, within BBR_RS13435 at 784.923 kb on + strand, within BBR_RS13435 at 784.929 kb on - strand, within BBR_RS13435 at 784.933 kb on + strand, within BBR_RS13435 at 784.941 kb on - strand, within BBR_RS13435 at 784.941 kb on - strand, within BBR_RS13435 at 784.941 kb on - strand, within BBR_RS13435 at 784.943 kb on + strand, within BBR_RS13435 at 785.110 kb on - strand, within BBR_RS13435 at 785.110 kb on - strand, within BBR_RS13435 at 785.116 kb on - strand, within BBR_RS13435 at 785.193 kb on + strand at 785.201 kb on - strand at 785.257 kb on + strand at 785.266 kb on + strand at 785.266 kb on + strand at 785.266 kb on + strand at 785.274 kb on - strand at 785.279 kb on - strand at 785.300 kb on + strand at 785.300 kb on + strand at 785.300 kb on + strand at 785.334 kb on + strand at 785.334 kb on + strand at 785.417 kb on + strand at 785.417 kb on + strand at 785.481 kb on - strand, within BBR_RS13440 at 785.493 kb on - strand, within BBR_RS13440 at 785.539 kb on - strand, within BBR_RS13440 at 785.546 kb on + strand, within BBR_RS13440 at 785.546 kb on + strand, within BBR_RS13440 at 785.554 kb on - strand, within BBR_RS13440 at 785.556 kb on + strand, within BBR_RS13440 at 785.560 kb on + strand, within BBR_RS13440 at 785.564 kb on - strand, within BBR_RS13440 at 785.568 kb on - strand, within BBR_RS13440 at 785.568 kb on - strand, within BBR_RS13440 at 785.568 kb on - strand, within BBR_RS13440 at 785.583 kb on - strand, within BBR_RS13440 at 785.587 kb on + strand, within BBR_RS13440 at 785.587 kb on + strand, within BBR_RS13440 at 785.587 kb on + strand, within BBR_RS13440 at 785.587 kb on + strand, within BBR_RS13440 at 785.595 kb on - strand, within BBR_RS13440 at 785.595 kb on - strand, within BBR_RS13440 at 785.650 kb on + strand, within BBR_RS13440 at 785.653 kb on - strand, within BBR_RS13440 at 785.667 kb on - strand, within BBR_RS13440 at 785.669 kb on + strand, within BBR_RS13440 at 785.672 kb on - strand, within BBR_RS13440 at 785.672 kb on - strand, within BBR_RS13440 at 785.672 kb on - strand, within BBR_RS13440 at 785.677 kb on - strand, within BBR_RS13440 at 785.677 kb on - strand, within BBR_RS13440 at 785.712 kb on + strand, within BBR_RS13440 at 785.712 kb on + strand, within BBR_RS13440 at 785.726 kb on + strand, within BBR_RS13440 at 785.733 kb on + strand, within BBR_RS13440 at 785.734 kb on + strand, within BBR_RS13440 at 785.734 kb on + strand, within BBR_RS13440 at 785.747 kb on + strand, within BBR_RS13440 at 785.769 kb on + strand, within BBR_RS13440 at 785.883 kb on + strand, within BBR_RS13440 at 785.934 kb on - strand, within BBR_RS13440 at 786.057 kb on - strand, within BBR_RS13440 at 786.064 kb on + strand, within BBR_RS13440 at 786.069 kb on + strand, within BBR_RS13440 at 786.101 kb on + strand, within BBR_RS13440 at 786.109 kb on - strand, within BBR_RS13440 at 786.177 kb on + strand, within BBR_RS13440 at 786.208 kb on + strand, within BBR_RS13440 at 786.216 kb on - strand, within BBR_RS13440 at 786.216 kb on - strand, within BBR_RS13440 at 786.221 kb on - strand, within BBR_RS13440 at 786.221 kb on - strand, within BBR_RS13440 at 786.230 kb on - strand, within BBR_RS13440 at 786.308 kb on + strand, within BBR_RS13440 at 786.314 kb on + strand, within BBR_RS13440
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 6; diet=StandardDiet; sample=FecalPellet remove 782,978 + BBR_RS13425 0.72 -0.5 782,989 - BBR_RS13425 0.73 +1.0 783,079 - BBR_RS13425 0.84 +0.8 783,089 + BBR_RS13425 0.86 -0.7 783,094 + BBR_RS13425 0.86 -1.6 783,106 + BBR_RS13425 0.88 +3.2 783,166 + +0.3 783,174 - +3.5 783,180 - -0.3 783,180 - -1.1 783,187 + -2.0 783,199 + -0.9 783,199 + -2.3 783,258 - -1.5 783,385 - BBR_RS13430 0.15 +1.3 783,391 - BBR_RS13430 0.15 -1.3 783,428 - BBR_RS13430 0.21 -1.1 783,434 + BBR_RS13430 0.22 -0.7 783,444 - BBR_RS13430 0.23 -0.1 783,488 + BBR_RS13430 0.30 -2.0 783,488 + BBR_RS13430 0.30 -0.3 783,497 - BBR_RS13430 0.32 -2.5 783,513 + BBR_RS13430 0.34 -2.1 783,530 + BBR_RS13430 0.37 -1.4 783,533 - BBR_RS13430 0.37 -1.9 783,544 + BBR_RS13430 0.39 -1.2 783,544 + BBR_RS13430 0.39 -1.3 783,580 - BBR_RS13430 0.44 -1.6 783,593 + BBR_RS13430 0.46 -1.0 783,595 + BBR_RS13430 0.46 +0.7 783,598 + BBR_RS13430 0.47 -2.1 783,601 - BBR_RS13430 0.47 -2.6 783,601 - BBR_RS13430 0.47 +0.0 783,605 + BBR_RS13430 0.48 -2.2 783,700 - BBR_RS13430 0.62 -1.6 783,700 - BBR_RS13430 0.62 -2.9 783,751 + BBR_RS13430 0.70 +1.2 783,840 - BBR_RS13430 0.83 -1.4 783,857 + BBR_RS13430 0.86 -0.7 783,900 + -1.6 783,900 + -1.6 783,942 + -0.8 783,942 + -1.0 783,960 + -2.1 784,007 + -0.9 784,009 - -1.8 784,090 + BBR_RS13435 0.11 -1.2 784,174 - BBR_RS13435 0.17 -0.1 784,187 + BBR_RS13435 0.18 -1.4 784,195 - BBR_RS13435 0.18 -1.5 784,243 + BBR_RS13435 0.22 -1.0 784,243 + BBR_RS13435 0.22 -3.2 784,248 + BBR_RS13435 0.22 -2.1 784,253 + BBR_RS13435 0.22 -0.6 784,256 - BBR_RS13435 0.23 -1.6 784,256 - BBR_RS13435 0.23 +0.7 784,256 - BBR_RS13435 0.23 -0.8 784,263 - BBR_RS13435 0.23 -1.4 784,310 - BBR_RS13435 0.27 -1.8 784,355 + BBR_RS13435 0.30 -0.8 784,364 - BBR_RS13435 0.31 +1.2 784,378 - BBR_RS13435 0.32 +1.4 784,422 - BBR_RS13435 0.35 +1.2 784,427 - BBR_RS13435 0.35 -1.7 784,431 + BBR_RS13435 0.35 -1.8 784,494 + BBR_RS13435 0.40 +0.3 784,502 - BBR_RS13435 0.41 -1.6 784,502 - BBR_RS13435 0.41 -2.8 784,502 - BBR_RS13435 0.41 -0.8 784,632 + BBR_RS13435 0.50 -1.0 784,658 + BBR_RS13435 0.52 +0.0 784,658 + BBR_RS13435 0.52 +0.7 784,664 - BBR_RS13435 0.52 -1.9 784,673 + BBR_RS13435 0.53 +0.0 784,698 + BBR_RS13435 0.55 -0.3 784,698 + BBR_RS13435 0.55 -1.0 784,706 - BBR_RS13435 0.56 -2.4 784,708 + BBR_RS13435 0.56 -0.8 784,845 + BBR_RS13435 0.66 -1.8 784,870 - BBR_RS13435 0.67 -2.1 784,872 + BBR_RS13435 0.68 -0.3 784,906 - BBR_RS13435 0.70 -1.6 784,915 + BBR_RS13435 0.71 +0.2 784,915 + BBR_RS13435 0.71 -1.9 784,923 + BBR_RS13435 0.71 -0.7 784,929 - BBR_RS13435 0.72 -2.3 784,933 + BBR_RS13435 0.72 -1.5 784,941 - BBR_RS13435 0.73 -1.3 784,941 - BBR_RS13435 0.73 -1.9 784,941 - BBR_RS13435 0.73 -1.4 784,943 + BBR_RS13435 0.73 -1.2 785,110 - BBR_RS13435 0.85 -1.7 785,110 - BBR_RS13435 0.85 -1.4 785,116 - BBR_RS13435 0.85 -1.8 785,193 + -1.3 785,201 - -1.5 785,257 + -2.0 785,266 + -1.3 785,266 + +1.9 785,266 + -0.3 785,274 - -0.8 785,279 - +2.5 785,300 + -1.5 785,300 + +2.3 785,300 + -1.2 785,334 + -0.6 785,334 + -1.2 785,417 + -1.0 785,417 + +0.9 785,481 - BBR_RS13440 0.14 +1.9 785,493 - BBR_RS13440 0.15 +0.9 785,539 - BBR_RS13440 0.19 +1.4 785,546 + BBR_RS13440 0.19 -1.4 785,546 + BBR_RS13440 0.19 -2.5 785,554 - BBR_RS13440 0.20 +1.2 785,556 + BBR_RS13440 0.20 -1.5 785,560 + BBR_RS13440 0.20 -1.3 785,564 - BBR_RS13440 0.21 +0.4 785,568 - BBR_RS13440 0.21 +0.1 785,568 - BBR_RS13440 0.21 -1.2 785,568 - BBR_RS13440 0.21 -0.3 785,583 - BBR_RS13440 0.22 -1.1 785,587 + BBR_RS13440 0.22 -1.6 785,587 + BBR_RS13440 0.22 +1.4 785,587 + BBR_RS13440 0.22 -0.2 785,587 + BBR_RS13440 0.22 -0.3 785,595 - BBR_RS13440 0.23 -0.8 785,595 - BBR_RS13440 0.23 +1.2 785,650 + BBR_RS13440 0.27 +1.2 785,653 - BBR_RS13440 0.27 +0.3 785,667 - BBR_RS13440 0.28 -0.1 785,669 + BBR_RS13440 0.28 -1.7 785,672 - BBR_RS13440 0.29 -0.5 785,672 - BBR_RS13440 0.29 -2.0 785,672 - BBR_RS13440 0.29 +0.0 785,677 - BBR_RS13440 0.29 -1.2 785,677 - BBR_RS13440 0.29 -1.6 785,712 + BBR_RS13440 0.32 -2.2 785,712 + BBR_RS13440 0.32 -1.9 785,726 + BBR_RS13440 0.33 -1.0 785,733 + BBR_RS13440 0.33 -3.1 785,734 + BBR_RS13440 0.33 -2.0 785,734 + BBR_RS13440 0.33 -2.2 785,747 + BBR_RS13440 0.34 -2.0 785,769 + BBR_RS13440 0.36 -0.9 785,883 + BBR_RS13440 0.44 -0.5 785,934 - BBR_RS13440 0.48 -0.8 786,057 - BBR_RS13440 0.57 -1.8 786,064 + BBR_RS13440 0.58 -0.5 786,069 + BBR_RS13440 0.58 -0.9 786,101 + BBR_RS13440 0.61 -0.1 786,109 - BBR_RS13440 0.61 +1.6 786,177 + BBR_RS13440 0.66 -0.4 786,208 + BBR_RS13440 0.69 -2.5 786,216 - BBR_RS13440 0.69 -2.5 786,216 - BBR_RS13440 0.69 -3.0 786,221 - BBR_RS13440 0.70 -0.2 786,221 - BBR_RS13440 0.70 -0.9 786,230 - BBR_RS13440 0.70 -1.6 786,308 + BBR_RS13440 0.76 -1.0 786,314 + BBR_RS13440 0.77 +1.4
Or see this region's nucleotide sequence