Experiment: chicken 10; day 5; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13095 and BBR_RS13100 are separated by 255 nucleotides BBR_RS13100 and BBR_RS13105 are separated by 162 nucleotides
BBR_RS13095: BBR_RS13095 - beta-galactosidase, at 711,197 to 713,272
_RS13095
BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874
_RS13100
BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458
_RS13105
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 712.558 kb on + strand, within BBR_RS13095 at 712.588 kb on + strand, within BBR_RS13095 at 712.610 kb on + strand, within BBR_RS13095 at 712.641 kb on - strand, within BBR_RS13095 at 712.655 kb on + strand, within BBR_RS13095 at 712.668 kb on + strand, within BBR_RS13095 at 712.678 kb on + strand, within BBR_RS13095 at 712.687 kb on + strand, within BBR_RS13095 at 712.687 kb on + strand, within BBR_RS13095 at 712.714 kb on + strand, within BBR_RS13095 at 712.723 kb on - strand, within BBR_RS13095 at 712.723 kb on - strand, within BBR_RS13095 at 712.743 kb on + strand, within BBR_RS13095 at 712.800 kb on - strand, within BBR_RS13095 at 712.811 kb on + strand, within BBR_RS13095 at 712.811 kb on + strand, within BBR_RS13095 at 712.821 kb on + strand, within BBR_RS13095 at 712.830 kb on - strand, within BBR_RS13095 at 712.836 kb on + strand, within BBR_RS13095 at 712.839 kb on + strand, within BBR_RS13095 at 712.873 kb on - strand, within BBR_RS13095 at 712.880 kb on - strand, within BBR_RS13095 at 712.887 kb on + strand, within BBR_RS13095 at 712.897 kb on + strand, within BBR_RS13095 at 712.897 kb on + strand, within BBR_RS13095 at 712.906 kb on + strand, within BBR_RS13095 at 712.906 kb on + strand, within BBR_RS13095 at 713.011 kb on + strand, within BBR_RS13095 at 713.014 kb on - strand, within BBR_RS13095 at 713.020 kb on - strand, within BBR_RS13095 at 713.023 kb on + strand, within BBR_RS13095 at 713.038 kb on + strand, within BBR_RS13095 at 713.112 kb on + strand at 713.112 kb on + strand at 713.117 kb on + strand at 713.130 kb on - strand at 713.138 kb on - strand at 713.199 kb on + strand at 713.217 kb on - strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.274 kb on - strand at 713.274 kb on - strand at 713.281 kb on + strand at 713.284 kb on - strand at 713.425 kb on - strand at 713.558 kb on + strand at 713.558 kb on + strand at 713.566 kb on - strand at 713.584 kb on + strand at 713.641 kb on - strand at 713.713 kb on + strand, within BBR_RS13100 at 713.735 kb on - strand, within BBR_RS13100 at 713.769 kb on - strand, within BBR_RS13100 at 713.771 kb on + strand, within BBR_RS13100 at 713.779 kb on - strand, within BBR_RS13100 at 713.789 kb on - strand, within BBR_RS13100 at 713.795 kb on + strand, within BBR_RS13100 at 713.827 kb on + strand, within BBR_RS13100 at 713.827 kb on + strand, within BBR_RS13100 at 713.835 kb on - strand, within BBR_RS13100 at 713.837 kb on + strand, within BBR_RS13100 at 713.902 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.918 kb on - strand, within BBR_RS13100 at 713.918 kb on - strand, within BBR_RS13100 at 713.925 kb on + strand, within BBR_RS13100 at 713.933 kb on - strand, within BBR_RS13100 at 713.933 kb on - strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.984 kb on + strand, within BBR_RS13100 at 714.034 kb on + strand, within BBR_RS13100 at 714.034 kb on + strand, within BBR_RS13100 at 714.060 kb on - strand, within BBR_RS13100 at 714.060 kb on - strand, within BBR_RS13100 at 714.112 kb on - strand, within BBR_RS13100 at 714.167 kb on + strand, within BBR_RS13100 at 714.186 kb on + strand, within BBR_RS13100 at 714.186 kb on + strand, within BBR_RS13100 at 714.206 kb on - strand, within BBR_RS13100 at 714.232 kb on - strand, within BBR_RS13100 at 714.242 kb on - strand, within BBR_RS13100 at 714.267 kb on - strand, within BBR_RS13100 at 714.343 kb on + strand, within BBR_RS13100 at 714.351 kb on - strand, within BBR_RS13100 at 714.363 kb on + strand, within BBR_RS13100 at 714.454 kb on + strand, within BBR_RS13100 at 714.481 kb on - strand, within BBR_RS13100 at 714.504 kb on + strand, within BBR_RS13100 at 714.504 kb on - strand, within BBR_RS13100 at 714.542 kb on + strand, within BBR_RS13100 at 714.555 kb on - strand, within BBR_RS13100 at 714.555 kb on - strand, within BBR_RS13100 at 714.616 kb on + strand, within BBR_RS13100 at 714.624 kb on - strand, within BBR_RS13100 at 714.624 kb on - strand, within BBR_RS13100 at 714.624 kb on - strand, within BBR_RS13100 at 714.641 kb on + strand, within BBR_RS13100 at 714.641 kb on + strand, within BBR_RS13100 at 714.655 kb on + strand, within BBR_RS13100 at 714.688 kb on + strand, within BBR_RS13100 at 714.706 kb on - strand, within BBR_RS13100 at 714.725 kb on + strand, within BBR_RS13100 at 714.748 kb on - strand at 714.748 kb on - strand at 714.748 kb on - strand at 714.748 kb on - strand at 714.768 kb on + strand at 714.778 kb on + strand at 714.778 kb on + strand at 714.778 kb on + strand at 714.778 kb on + strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.786 kb on - strand at 714.851 kb on + strand at 714.859 kb on - strand at 714.859 kb on - strand at 714.869 kb on + strand at 714.911 kb on - strand at 714.956 kb on - strand at 714.957 kb on + strand at 714.975 kb on + strand at 714.981 kb on + strand at 715.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 10; day 5; diet=StandardDiet; sample=FecalPellet remove 712,558 + BBR_RS13095 0.66 +0.2 712,588 + BBR_RS13095 0.67 -1.3 712,610 + BBR_RS13095 0.68 -2.3 712,641 - BBR_RS13095 0.70 +1.0 712,655 + BBR_RS13095 0.70 -2.7 712,668 + BBR_RS13095 0.71 +1.3 712,678 + BBR_RS13095 0.71 +2.0 712,687 + BBR_RS13095 0.72 +1.5 712,687 + BBR_RS13095 0.72 -0.5 712,714 + BBR_RS13095 0.73 +0.7 712,723 - BBR_RS13095 0.74 -0.6 712,723 - BBR_RS13095 0.74 +2.2 712,743 + BBR_RS13095 0.74 -0.7 712,800 - BBR_RS13095 0.77 +1.1 712,811 + BBR_RS13095 0.78 +0.5 712,811 + BBR_RS13095 0.78 -0.2 712,821 + BBR_RS13095 0.78 -1.0 712,830 - BBR_RS13095 0.79 -1.3 712,836 + BBR_RS13095 0.79 +1.1 712,839 + BBR_RS13095 0.79 -0.2 712,873 - BBR_RS13095 0.81 -0.2 712,880 - BBR_RS13095 0.81 +0.5 712,887 + BBR_RS13095 0.81 +1.3 712,897 + BBR_RS13095 0.82 -0.2 712,897 + BBR_RS13095 0.82 -0.6 712,906 + BBR_RS13095 0.82 -1.2 712,906 + BBR_RS13095 0.82 -0.6 713,011 + BBR_RS13095 0.87 -0.2 713,014 - BBR_RS13095 0.88 -2.4 713,020 - BBR_RS13095 0.88 -0.3 713,023 + BBR_RS13095 0.88 -1.6 713,038 + BBR_RS13095 0.89 +0.4 713,112 + +2.3 713,112 + +0.6 713,117 + -0.4 713,130 - +0.3 713,138 - +2.5 713,199 + -1.9 713,217 - +0.5 713,266 + -1.5 713,266 + -1.7 713,266 + +1.5 713,266 + +0.7 713,274 - -1.8 713,274 - -0.7 713,281 + +0.0 713,284 - +0.4 713,425 - -0.7 713,558 + +0.1 713,558 + +0.1 713,566 - -0.7 713,584 + +0.2 713,641 - -0.7 713,713 + BBR_RS13100 0.14 -1.4 713,735 - BBR_RS13100 0.15 -0.4 713,769 - BBR_RS13100 0.18 -0.1 713,771 + BBR_RS13100 0.18 -1.9 713,779 - BBR_RS13100 0.19 -0.7 713,789 - BBR_RS13100 0.19 -1.3 713,795 + BBR_RS13100 0.20 -1.5 713,827 + BBR_RS13100 0.22 -1.5 713,827 + BBR_RS13100 0.22 -1.1 713,835 - BBR_RS13100 0.23 +0.2 713,837 + BBR_RS13100 0.23 -1.0 713,902 + BBR_RS13100 0.28 -0.0 713,910 + BBR_RS13100 0.28 -0.5 713,910 + BBR_RS13100 0.28 -1.1 713,910 + BBR_RS13100 0.28 -0.2 713,918 - BBR_RS13100 0.29 -1.1 713,918 - BBR_RS13100 0.29 +0.2 713,925 + BBR_RS13100 0.29 -0.5 713,933 - BBR_RS13100 0.30 -0.7 713,933 - BBR_RS13100 0.30 +1.0 713,948 + BBR_RS13100 0.31 +1.8 713,948 + BBR_RS13100 0.31 -0.3 713,948 + BBR_RS13100 0.31 +0.9 713,948 + BBR_RS13100 0.31 +3.5 713,955 - BBR_RS13100 0.32 +0.1 713,955 - BBR_RS13100 0.32 +0.2 713,955 - BBR_RS13100 0.32 +1.3 713,955 - BBR_RS13100 0.32 -1.8 713,984 + BBR_RS13100 0.34 -0.3 714,034 + BBR_RS13100 0.38 +0.1 714,034 + BBR_RS13100 0.38 +1.0 714,060 - BBR_RS13100 0.39 +1.2 714,060 - BBR_RS13100 0.39 +0.5 714,112 - BBR_RS13100 0.43 +1.5 714,167 + BBR_RS13100 0.47 -1.2 714,186 + BBR_RS13100 0.49 -1.4 714,186 + BBR_RS13100 0.49 +1.0 714,206 - BBR_RS13100 0.50 +0.6 714,232 - BBR_RS13100 0.52 -0.3 714,242 - BBR_RS13100 0.53 -0.9 714,267 - BBR_RS13100 0.55 -0.8 714,343 + BBR_RS13100 0.61 -1.2 714,351 - BBR_RS13100 0.61 +0.9 714,363 + BBR_RS13100 0.62 -0.5 714,454 + BBR_RS13100 0.69 +0.1 714,481 - BBR_RS13100 0.71 -2.0 714,504 + BBR_RS13100 0.72 -1.9 714,504 - BBR_RS13100 0.72 -0.7 714,542 + BBR_RS13100 0.75 -1.3 714,555 - BBR_RS13100 0.76 -0.1 714,555 - BBR_RS13100 0.76 -1.0 714,616 + BBR_RS13100 0.81 -0.5 714,624 - BBR_RS13100 0.81 -1.8 714,624 - BBR_RS13100 0.81 -0.9 714,624 - BBR_RS13100 0.81 +0.9 714,641 + BBR_RS13100 0.83 -1.8 714,641 + BBR_RS13100 0.83 +0.3 714,655 + BBR_RS13100 0.84 -1.6 714,688 + BBR_RS13100 0.86 -0.6 714,706 - BBR_RS13100 0.87 -1.9 714,725 + BBR_RS13100 0.89 -0.8 714,748 - -0.2 714,748 - +2.0 714,748 - -0.4 714,748 - +0.5 714,768 + +0.8 714,778 + -1.1 714,778 + -0.9 714,778 + -0.0 714,778 + -0.5 714,786 - +0.3 714,786 - -1.5 714,786 - -1.5 714,786 - +0.2 714,786 - +0.4 714,786 - +1.1 714,786 - -0.5 714,851 + -1.5 714,859 - -0.1 714,859 - -3.0 714,869 + +0.9 714,911 - -2.3 714,956 - +1.9 714,957 + -1.4 714,975 + +0.8 714,981 + +0.9 715,021 + -0.3
Or see this region's nucleotide sequence