Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13285

Experiment: p-Coumaric (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with MOPS
3,004,107	+		PFLU_RS13280	0.68	-0.4
3,004,119	+		PFLU_RS13280	0.69	+0.6
3,004,119	+		PFLU_RS13280	0.69	+1.2
3,004,120	-		PFLU_RS13280	0.69	+1.0
3,004,120	-		PFLU_RS13280	0.69	-0.4
3,004,120	-		PFLU_RS13280	0.69	-0.5
3,004,120	-		PFLU_RS13280	0.69	+0.4
3,004,208	+		PFLU_RS13280	0.72	+0.0
3,004,208	+		PFLU_RS13280	0.72	+0.9
3,004,208	+		PFLU_RS13280	0.72	+0.4
3,004,208	+		PFLU_RS13280	0.72	+1.9
3,004,209	-		PFLU_RS13280	0.72	-1.0
3,004,209	-		PFLU_RS13280	0.72	+1.5
3,004,209	-		PFLU_RS13280	0.72	-1.0
3,004,209	-		PFLU_RS13280	0.72	-2.4
3,004,209	-		PFLU_RS13280	0.72	+2.0
3,004,209	-		PFLU_RS13280	0.72	-0.1
3,004,209	-		PFLU_RS13280	0.72	+0.6
3,004,209	-		PFLU_RS13280	0.72	-0.3
3,004,264	-		PFLU_RS13280	0.73	+2.2
3,004,554	+		PFLU_RS13280	0.83	+1.4
3,004,554	+		PFLU_RS13280	0.83	-0.6
3,004,555	-		PFLU_RS13280	0.83	+0.6
3,004,555	-		PFLU_RS13280	0.83	-0.6
3,004,555	-		PFLU_RS13280	0.83	-1.0
3,004,555	-		PFLU_RS13280	0.83	-0.6
3,004,617	+		PFLU_RS13280	0.85	-0.1
3,004,618	-		PFLU_RS13280	0.85	-0.6
3,004,632	-		PFLU_RS13280	0.85	+2.8
3,004,632	-		PFLU_RS13280	0.85	+0.2
3,004,632	-		PFLU_RS13280	0.85	+3.2
3,004,854	+				-0.8
3,004,854	+				-0.6
3,004,947	+				+0.6
3,004,947	+				+1.2
3,004,947	+				+0.6
3,004,947	+				+4.7
3,004,947	+				+0.4
3,004,947	+				-0.3
3,004,947	+				+0.6
3,004,948	-				-0.6
3,004,948	-				-0.3
3,004,948	-				-1.3
3,004,948	-				+2.2
3,004,948	-				-0.8
3,004,948	-				-0.4
3,004,948	-				+1.6
3,004,948	-				+0.6
3,005,029	+				-0.8
3,005,068	+				+0.6
3,005,091	+				+1.8
3,005,091	+				+0.4
3,005,092	-				+0.2
3,005,092	-				+0.9
3,005,100	-				-1.9
3,005,167	+				-0.3
3,005,167	+				+1.7
3,005,168	-				-1.5
3,005,268	-		PFLU_RS13285	0.16	+1.1
3,005,364	-		PFLU_RS13285	0.24	-0.6
3,005,364	-		PFLU_RS13285	0.24	-1.4
3,005,364	-		PFLU_RS13285	0.24	-0.8
3,005,364	-		PFLU_RS13285	0.24	+4.4
3,005,481	+		PFLU_RS13285	0.34	-0.4
3,005,727	+		PFLU_RS13285	0.56	+1.3
3,005,817	+		PFLU_RS13285	0.64	+1.1
3,005,817	+		PFLU_RS13285	0.64	+2.2
3,005,817	+		PFLU_RS13285	0.64	+1.9
3,005,818	-		PFLU_RS13285	0.64	-0.4
3,005,818	-		PFLU_RS13285	0.64	+3.8
3,005,859	+		PFLU_RS13285	0.67	+2.7
3,005,859	+		PFLU_RS13285	0.67	+0.6
3,006,238	+				-0.1
3,006,246	+				-1.3
3,006,246	+				+0.2
3,006,247	-				-0.8
3,006,263	+				-0.1
3,006,263	+				-1.8
3,006,264	-				+0.9
3,006,264	-				-0.8
3,006,264	-				-1.8
3,006,298	+				+0.2
3,006,299	-				-0.1
3,006,319	+				-0.3
3,006,319	+				-0.6
3,006,319	+				+0.6
3,006,319	+				+1.0
3,006,320	-				+2.0
3,006,320	-				-1.0
3,006,320	-				+1.3
3,006,320	-				-0.6
3,006,349	+				+1.8
3,006,349	+				-1.6
3,006,349	+				+0.2
3,006,350	-				+0.6
3,006,350	-				+1.0
3,006,350	-				+0.6
3,006,350	-				-2.5
3,006,350	-				-0.4
3,006,350	-				-0.9
3,006,350	-				-0.6
3,006,350	-				+0.6
3,006,350	-				+5.8
3,006,350	-				-0.4
3,006,351	+				-1.3
3,006,351	+				-1.3
3,006,461	+				-1.1
3,006,461	+				+0.2
3,006,462	-				-1.0
3,006,462	-				-0.4
3,006,462	-				-0.4
3,006,698	+		PFLU_RS13290	0.42	-1.1
3,006,698	+		PFLU_RS13290	0.42	-1.1
3,006,699	-		PFLU_RS13290	0.42	+1.6
3,006,699	-		PFLU_RS13290	0.42	+2.8
3,006,699	-		PFLU_RS13290	0.42	-1.0
3,006,699	-		PFLU_RS13290	0.42	-0.8
3,006,745	+		PFLU_RS13290	0.49	-0.6
3,006,745	+		PFLU_RS13290	0.49	+3.2
3,006,745	+		PFLU_RS13290	0.49	+0.5
3,006,745	+		PFLU_RS13290	0.49	-2.2
3,006,745	+		PFLU_RS13290	0.49	-1.0
3,006,746	-		PFLU_RS13290	0.49	-0.6
3,006,746	-		PFLU_RS13290	0.49	-0.4
3,006,746	-		PFLU_RS13290	0.49	-1.7
3,006,746	-		PFLU_RS13290	0.49	-0.8
3,006,746	-		PFLU_RS13290	0.49	-0.6
3,006,746	-		PFLU_RS13290	0.49	-1.9
3,006,881	+		PFLU_RS13290	0.68	+2.2
3,006,881	+		PFLU_RS13290	0.68	-0.1
3,006,881	+		PFLU_RS13290	0.68	-1.5
3,006,881	+		PFLU_RS13290	0.68	-0.1
3,006,881	+		PFLU_RS13290	0.68	+1.6
3,006,881	+		PFLU_RS13290	0.68	+3.2
3,006,881	+		PFLU_RS13290	0.68	-0.6
3,006,881	+		PFLU_RS13290	0.68	+3.2
3,006,882	-		PFLU_RS13290	0.68	-0.1
3,006,882	-		PFLU_RS13290	0.68	+2.2
3,006,993	+		PFLU_RS13290	0.84	+3.2
3,006,993	+		PFLU_RS13290	0.84	-0.8
3,006,993	+		PFLU_RS13290	0.84	+0.2
3,006,993	+		PFLU_RS13290	0.84	-0.6
3,006,993	+		PFLU_RS13290	0.84	+1.8
3,006,993	+		PFLU_RS13290	0.84	+0.6
3,006,993	+		PFLU_RS13290	0.84	-0.8
3,006,993	+		PFLU_RS13290	0.84	+1.2
3,006,993	+		PFLU_RS13290	0.84	-0.1
3,006,993	+		PFLU_RS13290	0.84	-0.5
3,006,994	-		PFLU_RS13290	0.84	+0.7
3,006,994	-		PFLU_RS13290	0.84	-1.5
3,006,994	-		PFLU_RS13290	0.84	-0.6
3,006,994	-		PFLU_RS13290	0.84	-0.8
3,006,994	-		PFLU_RS13290	0.84	-0.4
3,006,994	-		PFLU_RS13290	0.84	-0.4
3,006,994	-		PFLU_RS13290	0.84	-1.7
3,006,994	-		PFLU_RS13290	0.84	+0.1
3,006,994	-		PFLU_RS13290	0.84	-1.0
3,006,994	-		PFLU_RS13290	0.84	-1.4
3,006,994	-		PFLU_RS13290	0.84	+0.0
3,006,994	-		PFLU_RS13290	0.84	+0.5
3,006,994	-		PFLU_RS13290	0.84	+0.3
3,006,994	-		PFLU_RS13290	0.84	-0.8
3,007,073	+				-0.1
3,007,119	+				-0.6
3,007,133	+				-0.8
3,007,133	+				+0.1
3,007,133	+				-1.3
3,007,133	+				-0.1
3,007,133	+				-1.4
3,007,134	-				-0.1
3,007,154	+				-0.4
3,007,154	+				+0.0
3,007,154	+				+0.0
3,007,154	+				-1.9
3,007,155	-				-1.3
3,007,155	-				-1.1
3,007,155	-				+1.2
3,007,155	-				+3.4
3,007,155	-				+1.9
3,007,155	-				-0.8
3,007,155	-				+0.2
3,007,169	+				-0.6
3,007,169	+				-0.6
3,007,169	+				-0.4
3,007,169	+				-0.5
3,007,170	-				-1.1
3,007,170	-				+1.1
3,007,170	-				-0.1
3,007,211	+				-1.5
3,007,212	-				-0.1
3,007,212	-				-0.1
3,007,212	-				-1.1
3,007,212	-				-1.3
3,007,212	-				-0.4
3,007,220	+				+0.2
3,007,220	+				+1.2
3,007,220	+				+1.0
3,007,220	+				-0.6
3,007,220	+				-0.6
3,007,220	+				-1.1
3,007,220	+				+1.2
3,007,220	+				+0.8
3,007,220	+				+0.6
3,007,220	+				-0.8
3,007,221	-				-0.6
3,007,221	-				+0.4
3,007,221	-				-1.7
3,007,221	-				+0.3
3,007,221	-				+0.3
3,007,221	-				+0.5
3,007,221	-				+1.3