Experiment: p-Coumaric (C) and Ammonium chloride (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02690 and PFLU_RS02695 are separated by 332 nucleotides PFLU_RS02695 and PFLU_RS02700 are separated by 195 nucleotides PFLU_RS02700 and PFLU_RS02705 are separated by 3 nucleotides
PFLU_RS02690: PFLU_RS02690 - hypothetical protein, at 620,256 to 620,444
_RS02690
PFLU_RS02695: PFLU_RS02695 - azurin, at 620,777 to 621,223
_RS02695
PFLU_RS02700: PFLU_RS02700 - ammonia-dependent NAD(+) synthetase, at 621,419 to 622,246
_RS02700
PFLU_RS02705: PFLU_RS02705 - nicotinate phosphoribosyltransferase, at 622,250 to 623,464
_RS02705
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.456 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.537 kb on + strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.669 kb on + strand at 620.682 kb on + strand at 620.683 kb on - strand at 620.706 kb on + strand at 620.706 kb on + strand at 620.707 kb on - strand at 620.707 kb on - strand at 620.714 kb on + strand at 620.715 kb on - strand at 620.715 kb on - strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.754 kb on + strand at 620.754 kb on + strand at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.217 kb on + strand at 621.218 kb on - strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.388 kb on + strand at 621.389 kb on - strand at 621.389 kb on - strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.462 kb on + strand at 621.462 kb on + strand at 621.463 kb on - strand at 621.463 kb on - strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.476 kb on - strand at 621.476 kb on - strand at 621.534 kb on + strand, within PFLU_RS02700 at 621.534 kb on + strand, within PFLU_RS02700 at 621.535 kb on - strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 622.001 kb on - strand, within PFLU_RS02700 at 622.235 kb on + strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.261 kb on + strand at 622.261 kb on + strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.297 kb on - strand at 622.297 kb on - strand at 622.384 kb on + strand, within PFLU_RS02705 at 622.384 kb on + strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.482 kb on - strand, within PFLU_RS02705 at 622.561 kb on - strand, within PFLU_RS02705 at 622.561 kb on - strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.639 kb on - strand, within PFLU_RS02705 at 622.710 kb on + strand, within PFLU_RS02705 at 622.805 kb on - strand, within PFLU_RS02705 at 623.008 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with MOPS remove 620,428 + +1.4 620,428 + +0.3 620,428 + -0.7 620,428 + -0.1 620,428 + -0.2 620,428 + +1.2 620,428 + -2.0 620,428 + -0.9 620,428 + -1.8 620,428 + -0.8 620,429 - -1.1 620,429 - +0.3 620,429 - -0.7 620,429 - -2.1 620,429 - -1.4 620,429 - +1.7 620,429 - -0.5 620,429 - -0.8 620,429 - +0.1 620,429 - +1.7 620,429 - -1.1 620,432 + -1.7 620,432 + -0.5 620,432 + -0.2 620,432 + -1.0 620,432 + +0.3 620,432 + -2.1 620,433 - +0.2 620,433 - +0.1 620,433 - -1.5 620,433 - +0.6 620,433 - +1.2 620,433 - +1.4 620,456 + -0.8 620,506 + +1.3 620,506 + +0.6 620,506 + +0.5 620,507 - -0.7 620,507 - +0.0 620,507 - +3.2 620,537 + -1.0 620,549 - +0.1 620,549 - +0.7 620,549 - -1.4 620,621 + +0.3 620,621 + -0.4 620,621 + -1.7 620,621 + -0.2 620,621 + -0.2 620,621 + +0.3 620,622 - -0.4 620,622 - -1.5 620,622 - +0.9 620,622 - +2.3 620,635 + -0.9 620,635 + -0.7 620,635 + -0.9 620,635 + +0.3 620,635 + -0.2 620,635 + +0.5 620,635 + +0.7 620,635 + +0.0 620,636 - +0.1 620,636 - +0.5 620,636 - +0.3 620,636 - -0.2 620,636 - +0.7 620,636 - +0.0 620,636 - +0.1 620,636 - -0.7 620,669 + -0.9 620,682 + -0.1 620,683 - -0.8 620,706 + +0.9 620,706 + +1.3 620,707 - -1.7 620,707 - +0.5 620,714 + +0.9 620,715 - -0.0 620,715 - -1.3 620,722 + -0.5 620,722 + +0.3 620,722 + +0.3 620,723 - +1.3 620,723 - -1.1 620,723 - +1.3 620,747 + +0.9 620,747 + +3.4 620,747 + -1.9 620,747 + +1.9 620,747 + -2.0 620,747 + -0.4 620,747 + +1.3 620,747 + -1.2 620,747 + +0.9 620,747 + +1.1 620,747 + -0.8 620,747 + +0.3 620,747 + +0.8 620,747 + +0.6 620,747 + +1.3 620,748 - -1.5 620,748 - +0.9 620,748 - -1.6 620,748 - -2.2 620,748 - +0.2 620,748 - -0.2 620,748 - -0.1 620,748 - -0.5 620,748 - +1.8 620,748 - +2.9 620,748 - +1.3 620,754 + +0.4 620,754 + -1.6 620,974 + PFLU_RS02695 0.44 +2.2 620,974 + PFLU_RS02695 0.44 -0.7 620,974 + PFLU_RS02695 0.44 +0.6 620,974 + PFLU_RS02695 0.44 +1.6 620,974 + PFLU_RS02695 0.44 -0.2 620,974 + PFLU_RS02695 0.44 +0.5 620,974 + PFLU_RS02695 0.44 +0.9 620,975 - PFLU_RS02695 0.44 -0.3 620,975 - PFLU_RS02695 0.44 +0.6 620,975 - PFLU_RS02695 0.44 +2.0 620,975 - PFLU_RS02695 0.44 -0.2 620,975 - PFLU_RS02695 0.44 -1.0 621,044 - PFLU_RS02695 0.60 -0.9 621,044 - PFLU_RS02695 0.60 +0.9 621,044 - PFLU_RS02695 0.60 -0.7 621,044 - PFLU_RS02695 0.60 -0.1 621,044 - PFLU_RS02695 0.60 +1.9 621,050 + PFLU_RS02695 0.61 +1.0 621,050 + PFLU_RS02695 0.61 -0.8 621,051 - PFLU_RS02695 0.61 -1.3 621,051 - PFLU_RS02695 0.61 +2.9 621,051 - PFLU_RS02695 0.61 +2.0 621,051 - PFLU_RS02695 0.61 -1.3 621,051 - PFLU_RS02695 0.61 -1.0 621,051 - PFLU_RS02695 0.61 +1.7 621,051 - PFLU_RS02695 0.61 +0.9 621,158 + PFLU_RS02695 0.85 -1.1 621,158 + PFLU_RS02695 0.85 +4.5 621,158 + PFLU_RS02695 0.85 +0.2 621,158 + PFLU_RS02695 0.85 +0.6 621,158 + PFLU_RS02695 0.85 -1.2 621,158 + PFLU_RS02695 0.85 -0.5 621,158 + PFLU_RS02695 0.85 -1.9 621,159 - PFLU_RS02695 0.85 -1.2 621,159 - PFLU_RS02695 0.85 +1.3 621,159 - PFLU_RS02695 0.85 -0.7 621,217 + -1.0 621,218 - +1.9 621,221 + -0.1 621,221 + +1.6 621,221 + +0.2 621,221 + -0.4 621,221 + +0.1 621,222 - +0.5 621,222 - +0.3 621,222 - +0.9 621,222 - -0.4 621,222 - -0.3 621,222 - +0.9 621,222 - +0.6 621,222 - -1.0 621,388 + -0.8 621,389 - -1.2 621,389 - +1.9 621,406 + +0.3 621,406 + +0.9 621,406 + +0.9 621,407 - -0.2 621,407 - +1.1 621,407 - +4.8 621,462 + +0.5 621,462 + +0.3 621,463 - +0.9 621,463 - +0.6 621,475 + -0.9 621,475 + +0.9 621,475 + +0.2 621,476 - +1.9 621,476 - +0.3 621,534 + PFLU_RS02700 0.14 +0.1 621,534 + PFLU_RS02700 0.14 -0.1 621,535 - PFLU_RS02700 0.14 +0.9 621,786 + PFLU_RS02700 0.44 +0.9 621,786 + PFLU_RS02700 0.44 -0.1 621,786 + PFLU_RS02700 0.44 +0.6 621,787 - PFLU_RS02700 0.44 -1.1 621,787 - PFLU_RS02700 0.44 +2.5 621,787 - PFLU_RS02700 0.44 +0.3 621,787 - PFLU_RS02700 0.44 -0.1 621,787 - PFLU_RS02700 0.44 +1.6 621,787 - PFLU_RS02700 0.44 +1.9 621,787 - PFLU_RS02700 0.44 +1.3 621,787 - PFLU_RS02700 0.44 -0.1 621,787 - PFLU_RS02700 0.44 -0.2 622,001 - PFLU_RS02700 0.70 +0.1 622,235 + +0.3 622,236 - +1.9 622,236 - +0.3 622,236 - -0.2 622,236 - +1.3 622,261 + +0.3 622,261 + -1.7 622,262 - +0.1 622,262 - -0.5 622,262 - +0.9 622,262 - +0.0 622,262 - +0.8 622,262 - -0.1 622,274 + -1.5 622,274 + -1.8 622,274 + -1.8 622,274 + -1.6 622,274 + +0.9 622,274 + +0.1 622,274 + -1.5 622,274 + -1.5 622,275 - -0.1 622,275 - -1.8 622,275 - -1.5 622,275 - +1.0 622,275 - -0.7 622,296 + +1.5 622,296 + -1.9 622,296 + -1.2 622,296 + -0.9 622,297 - -1.5 622,297 - -0.2 622,384 + PFLU_RS02705 0.11 -0.2 622,384 + PFLU_RS02705 0.11 +0.6 622,385 - PFLU_RS02705 0.11 -0.7 622,385 - PFLU_RS02705 0.11 -1.9 622,385 - PFLU_RS02705 0.11 +0.8 622,385 - PFLU_RS02705 0.11 -2.5 622,482 - PFLU_RS02705 0.19 -0.1 622,561 - PFLU_RS02705 0.26 -1.6 622,561 - PFLU_RS02705 0.26 +0.6 622,638 + PFLU_RS02705 0.32 -0.9 622,638 + PFLU_RS02705 0.32 -1.2 622,638 + PFLU_RS02705 0.32 +1.9 622,638 + PFLU_RS02705 0.32 +1.3 622,639 - PFLU_RS02705 0.32 -2.2 622,710 + PFLU_RS02705 0.38 -2.5 622,805 - PFLU_RS02705 0.46 +1.3 623,008 - PFLU_RS02705 0.62 -0.9 623,170 - PFLU_RS02705 0.76 -0.2 623,170 - PFLU_RS02705 0.76 -1.2 623,170 - PFLU_RS02705 0.76 -0.1
Or see this region's nucleotide sequence