Experiment: chicken 2; day 5; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14290 and BBR_RS14295 are separated by 169 nucleotides BBR_RS14295 and BBR_RS14300 are separated by 123 nucleotides BBR_RS14300 and BBR_RS14305 are separated by 172 nucleotides
BBR_RS14290: BBR_RS14290 - TerC family protein, at 981,569 to 982,555
_RS14290
BBR_RS14295: BBR_RS14295 - pyruvate kinase, at 982,725 to 984,167
_RS14295
BBR_RS14300: BBR_RS14300 - NUDIX hydrolase, at 984,291 to 984,890
_RS14300
BBR_RS14305: BBR_RS14305 - tRNA-Leu, at 985,063 to 985,136
_RS14305
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 981.873 kb on + strand, within BBR_RS14290 at 981.941 kb on + strand, within BBR_RS14290 at 981.999 kb on - strand, within BBR_RS14290 at 981.999 kb on - strand, within BBR_RS14290 at 982.059 kb on + strand, within BBR_RS14290 at 982.069 kb on + strand, within BBR_RS14290 at 982.069 kb on + strand, within BBR_RS14290 at 982.138 kb on + strand, within BBR_RS14290 at 982.138 kb on + strand, within BBR_RS14290 at 982.148 kb on - strand, within BBR_RS14290 at 982.148 kb on - strand, within BBR_RS14290 at 982.294 kb on + strand, within BBR_RS14290 at 982.315 kb on + strand, within BBR_RS14290 at 982.315 kb on + strand, within BBR_RS14290 at 982.376 kb on - strand, within BBR_RS14290 at 982.404 kb on - strand, within BBR_RS14290 at 982.462 kb on + strand at 982.501 kb on - strand at 982.502 kb on + strand at 982.644 kb on + strand at 982.652 kb on + strand at 982.714 kb on + strand at 984.138 kb on + strand at 984.148 kb on + strand at 984.148 kb on + strand at 984.186 kb on + strand at 984.191 kb on + strand at 984.253 kb on + strand at 984.352 kb on - strand, within BBR_RS14300 at 984.421 kb on - strand, within BBR_RS14300 at 984.458 kb on + strand, within BBR_RS14300 at 984.479 kb on + strand, within BBR_RS14300 at 984.489 kb on + strand, within BBR_RS14300 at 984.489 kb on + strand, within BBR_RS14300 at 984.489 kb on + strand, within BBR_RS14300 at 984.497 kb on - strand, within BBR_RS14300 at 984.590 kb on - strand, within BBR_RS14300 at 984.919 kb on + strand at 984.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 5; diet=StandardDiet; sample=FecalPellet remove 981,873 + BBR_RS14290 0.31 +0.2 981,941 + BBR_RS14290 0.38 +1.4 981,999 - BBR_RS14290 0.44 +1.1 981,999 - BBR_RS14290 0.44 +1.7 982,059 + BBR_RS14290 0.50 +2.0 982,069 + BBR_RS14290 0.51 -1.1 982,069 + BBR_RS14290 0.51 -1.0 982,138 + BBR_RS14290 0.58 -1.3 982,138 + BBR_RS14290 0.58 -1.6 982,148 - BBR_RS14290 0.59 -0.8 982,148 - BBR_RS14290 0.59 -0.1 982,294 + BBR_RS14290 0.73 +1.2 982,315 + BBR_RS14290 0.76 -0.8 982,315 + BBR_RS14290 0.76 +0.9 982,376 - BBR_RS14290 0.82 +0.0 982,404 - BBR_RS14290 0.85 +1.5 982,462 + -0.8 982,501 - +2.1 982,502 + +0.9 982,644 + -1.5 982,652 + -3.1 982,714 + -0.4 984,138 + -0.3 984,148 + -0.3 984,148 + -1.2 984,186 + -0.7 984,191 + -2.0 984,253 + +0.6 984,352 - BBR_RS14300 0.10 +0.4 984,421 - BBR_RS14300 0.22 -0.7 984,458 + BBR_RS14300 0.28 +2.0 984,479 + BBR_RS14300 0.31 +1.0 984,489 + BBR_RS14300 0.33 -1.3 984,489 + BBR_RS14300 0.33 +1.3 984,489 + BBR_RS14300 0.33 -0.7 984,497 - BBR_RS14300 0.34 +0.6 984,590 - BBR_RS14300 0.50 +1.4 984,919 + -0.8 984,919 + -1.1
Or see this region's nucleotide sequence