Experiment: chicken 2; day 5; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14020 and BBR_RS20815 are separated by 67 nucleotides BBR_RS20815 and BBR_RS14025 are separated by 225 nucleotides BBR_RS14025 and BBR_RS14030 overlap by 1 nucleotides
BBR_RS14020: BBR_RS14020 - TrkA family potassium uptake protein, at 921,915 to 922,337
_RS14020
BBR_RS20815: BBR_RS20815 - potassium transporter Trk, at 922,405 to 922,824
_RS20815
BBR_RS14025: BBR_RS14025 - NAD kinase, at 923,050 to 924,030
_RS14025
BBR_RS14030: BBR_RS14030 - DNA repair protein RecN, at 924,030 to 925,880
_RS14030
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.073 kb on + strand, within BBR_RS14020 at 922.121 kb on + strand, within BBR_RS14020 at 922.204 kb on + strand, within BBR_RS14020 at 922.217 kb on - strand, within BBR_RS14020 at 922.225 kb on + strand, within BBR_RS14020 at 922.238 kb on + strand, within BBR_RS14020 at 922.277 kb on + strand, within BBR_RS14020 at 922.384 kb on + strand at 922.429 kb on + strand at 922.437 kb on + strand at 922.503 kb on - strand, within BBR_RS20815 at 922.528 kb on + strand, within BBR_RS20815 at 922.581 kb on - strand, within BBR_RS20815 at 922.624 kb on - strand, within BBR_RS20815 at 922.648 kb on + strand, within BBR_RS20815 at 922.665 kb on - strand, within BBR_RS20815 at 922.738 kb on - strand, within BBR_RS20815 at 922.742 kb on - strand, within BBR_RS20815 at 922.754 kb on + strand, within BBR_RS20815 at 922.814 kb on - strand at 922.832 kb on + strand at 922.832 kb on + strand at 922.847 kb on - strand at 922.851 kb on + strand at 922.851 kb on + strand at 922.859 kb on + strand at 922.859 kb on - strand at 922.903 kb on + strand at 922.903 kb on + strand at 922.903 kb on + strand at 922.911 kb on + strand at 922.911 kb on - strand at 922.920 kb on + strand at 922.964 kb on + strand at 922.995 kb on - strand at 924.019 kb on + strand at 924.055 kb on + strand at 924.055 kb on + strand at 924.099 kb on - strand at 924.141 kb on - strand at 924.323 kb on + strand, within BBR_RS14030 at 924.375 kb on + strand, within BBR_RS14030 at 924.375 kb on + strand, within BBR_RS14030 at 924.395 kb on - strand, within BBR_RS14030 at 924.398 kb on + strand, within BBR_RS14030 at 924.406 kb on - strand, within BBR_RS14030 at 924.577 kb on + strand, within BBR_RS14030 at 924.577 kb on + strand, within BBR_RS14030 at 924.583 kb on + strand, within BBR_RS14030 at 924.583 kb on + strand, within BBR_RS14030 at 924.654 kb on + strand, within BBR_RS14030 at 924.656 kb on + strand, within BBR_RS14030 at 924.657 kb on - strand, within BBR_RS14030 at 924.662 kb on - strand, within BBR_RS14030 at 924.685 kb on + strand, within BBR_RS14030 at 924.715 kb on + strand, within BBR_RS14030 at 924.803 kb on - strand, within BBR_RS14030 at 924.826 kb on + strand, within BBR_RS14030 at 924.847 kb on - strand, within BBR_RS14030 at 924.862 kb on + strand, within BBR_RS14030 at 924.888 kb on + strand, within BBR_RS14030 at 924.977 kb on + strand, within BBR_RS14030 at 925.012 kb on - strand, within BBR_RS14030 at 925.014 kb on + strand, within BBR_RS14030 at 925.015 kb on - strand, within BBR_RS14030
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 2; day 5; diet=StandardDiet; sample=FecalPellet remove 922,073 + BBR_RS14020 0.37 +1.9 922,121 + BBR_RS14020 0.49 +1.4 922,204 + BBR_RS14020 0.68 -0.3 922,217 - BBR_RS14020 0.71 -1.3 922,225 + BBR_RS14020 0.73 -2.2 922,238 + BBR_RS14020 0.76 +1.8 922,277 + BBR_RS14020 0.86 +1.3 922,384 + -0.6 922,429 + -1.3 922,437 + -1.8 922,503 - BBR_RS20815 0.23 -0.6 922,528 + BBR_RS20815 0.29 -2.1 922,581 - BBR_RS20815 0.42 +0.7 922,624 - BBR_RS20815 0.52 +0.5 922,648 + BBR_RS20815 0.58 -2.3 922,665 - BBR_RS20815 0.62 +1.2 922,738 - BBR_RS20815 0.79 +0.5 922,742 - BBR_RS20815 0.80 -0.6 922,754 + BBR_RS20815 0.83 -2.3 922,814 - +0.2 922,832 + +1.5 922,832 + +1.4 922,847 - -0.3 922,851 + +0.1 922,851 + +0.9 922,859 + -0.8 922,859 - +2.7 922,903 + +2.0 922,903 + +1.3 922,903 + -2.2 922,911 + +0.5 922,911 - +1.9 922,920 + +1.3 922,964 + -1.5 922,995 - +1.5 924,019 + -1.0 924,055 + -2.9 924,055 + -1.5 924,099 - -0.1 924,141 - +1.1 924,323 + BBR_RS14030 0.16 -2.0 924,375 + BBR_RS14030 0.19 -1.5 924,375 + BBR_RS14030 0.19 -1.8 924,395 - BBR_RS14030 0.20 -2.2 924,398 + BBR_RS14030 0.20 -0.5 924,406 - BBR_RS14030 0.20 +1.2 924,577 + BBR_RS14030 0.30 -1.3 924,577 + BBR_RS14030 0.30 -0.5 924,583 + BBR_RS14030 0.30 -0.6 924,583 + BBR_RS14030 0.30 -2.3 924,654 + BBR_RS14030 0.34 -0.8 924,656 + BBR_RS14030 0.34 -2.3 924,657 - BBR_RS14030 0.34 +1.1 924,662 - BBR_RS14030 0.34 -1.5 924,685 + BBR_RS14030 0.35 -1.6 924,715 + BBR_RS14030 0.37 -2.3 924,803 - BBR_RS14030 0.42 -1.5 924,826 + BBR_RS14030 0.43 -3.0 924,847 - BBR_RS14030 0.44 +2.0 924,862 + BBR_RS14030 0.45 -2.0 924,888 + BBR_RS14030 0.46 +0.1 924,977 + BBR_RS14030 0.51 -0.8 925,012 - BBR_RS14030 0.53 -1.6 925,014 + BBR_RS14030 0.53 -1.1 925,015 - BBR_RS14030 0.53 -0.3
Or see this region's nucleotide sequence