Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26575

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
5,939,040	+		PFLU_RS26565	0.88	-1.7
5,939,041	-		PFLU_RS26565	0.89	+0.2
5,939,041	-		PFLU_RS26565	0.89	-0.3
5,939,074	+				-1.0
5,939,074	+				+0.7
5,939,074	+				+0.2
5,939,074	+				-1.9
5,939,074	+				-1.5
5,939,074	+				-1.0
5,939,075	-				-1.0
5,939,075	-				+1.3
5,939,075	-				+1.3
5,939,075	-				-2.0
5,939,080	+				-0.6
5,939,081	-				+2.9
5,939,081	-				+0.0
5,939,081	-				+0.0
5,939,081	-				+2.7
5,939,081	-				+1.3
5,939,094	+				+1.1
5,939,094	+				-2.0
5,939,095	-				-3.1
5,939,095	-				-0.8
5,939,095	-				-2.5
5,939,101	+				-1.5
5,939,101	+				-0.8
5,939,102	-				+0.0
5,939,102	-				+1.3
5,939,289	+		PFLU_RS26570	0.22	+0.0
5,939,290	-		PFLU_RS26570	0.22	+0.5
5,939,290	-		PFLU_RS26570	0.22	-2.0
5,939,600	+		PFLU_RS26570	0.59	-1.6
5,939,600	+		PFLU_RS26570	0.59	-0.7
5,939,693	+		PFLU_RS26570	0.70	-1.1
5,939,693	+		PFLU_RS26570	0.70	+2.1
5,939,693	+		PFLU_RS26570	0.70	+0.0
5,939,693	+		PFLU_RS26570	0.70	-2.1
5,939,693	+		PFLU_RS26570	0.70	-1.9
5,939,693	+		PFLU_RS26570	0.70	+0.0
5,939,693	+		PFLU_RS26570	0.70	-1.0
5,939,693	+		PFLU_RS26570	0.70	-1.3
5,939,693	+		PFLU_RS26570	0.70	-2.2
5,939,693	+		PFLU_RS26570	0.70	-1.0
5,939,693	+		PFLU_RS26570	0.70	-0.4
5,939,693	+		PFLU_RS26570	0.70	+1.3
5,939,693	+		PFLU_RS26570	0.70	-0.8
5,939,693	+		PFLU_RS26570	0.70	-0.8
5,939,693	+		PFLU_RS26570	0.70	-2.0
5,939,693	+		PFLU_RS26570	0.70	+0.0
5,939,693	+		PFLU_RS26570	0.70	-0.7
5,939,693	+		PFLU_RS26570	0.70	-2.1
5,939,693	+		PFLU_RS26570	0.70	+0.0
5,939,693	+		PFLU_RS26570	0.70	-0.3
5,939,845	+		PFLU_RS26570	0.88	-2.8
5,939,929	+				-2.0
5,939,929	+				+2.7
5,939,929	+				-0.3
5,939,929	+				-1.0
5,939,929	+				-1.0
5,939,929	+				+0.3
5,939,929	+				+0.3
5,939,929	+				+0.0
5,939,929	+				-1.1
5,939,929	+				+0.2
5,939,929	+				+1.8
5,939,929	+				-0.3
5,939,929	+				+1.6
5,939,929	+				-1.8
5,939,929	+				-0.5
5,939,929	+				+1.3
5,939,929	+				+2.7
5,939,929	+				+1.6
5,939,929	+				-0.6
5,939,929	+				-1.8
5,939,929	+				-0.3
5,939,939	+				-1.6
5,941,486	+				-0.7
5,941,486	+				-2.0
5,941,486	+				-0.4
5,941,486	+				+3.3
5,941,487	-				-0.3
5,941,487	-				-2.1
5,941,487	-				+3.8
5,941,487	-				+1.1
5,941,487	-				-1.1
5,941,490	+				-0.5
5,941,490	+				+0.5
5,941,490	+				+0.5
5,941,491	-				+0.3
5,941,491	-				+0.0
5,941,491	-				-1.3
5,941,491	-				+0.7
5,941,491	-				-0.7
5,941,491	-				+0.3
5,941,491	-				-0.6
5,941,491	-				-0.8
5,941,491	-				+0.3
5,941,491	-				+1.0
5,941,491	-				-0.0
5,941,491	-				-0.3
5,941,491	-				-0.8
5,941,491	-				-0.3
5,941,491	-				-1.9
5,941,543	+				+2.3
5,941,543	+				+1.2
5,941,543	+				+1.3
5,941,549	+				+1.3
5,941,550	-				+1.9
5,941,550	-				-0.8
5,941,550	-				-1.5
5,941,550	-				+0.7
5,941,550	-				-1.7
5,941,550	-				-2.3
5,941,550	-				+1.6
5,941,550	-				+0.0
5,941,550	-				+2.9
5,941,550	-				-1.4
5,941,605	-				+3.0
5,941,621	+				-0.2
5,941,621	+				+1.5
5,941,621	+				+1.1
5,941,621	+				-1.7
5,941,621	+				+0.1
5,941,621	+				-0.5
5,941,622	-				-1.3
5,941,622	-				+0.9
5,941,622	-				-1.8
5,941,622	-				-1.9
5,941,622	-				+2.7
5,941,747	-		PFLU_RS26580	0.20	-1.8
5,941,785	+		PFLU_RS26580	0.25	-0.1
5,941,786	-		PFLU_RS26580	0.25	-0.2
5,941,786	-		PFLU_RS26580	0.25	+1.0
5,941,786	-		PFLU_RS26580	0.25	-1.1
5,941,786	-		PFLU_RS26580	0.25	-0.8
5,941,786	-		PFLU_RS26580	0.25	-1.6
5,941,821	+		PFLU_RS26580	0.29	+1.6
5,941,873	-		PFLU_RS26580	0.36	-0.7
5,941,873	-		PFLU_RS26580	0.36	+0.2
5,941,873	-		PFLU_RS26580	0.36	+0.9
5,941,873	-		PFLU_RS26580	0.36	-0.3
5,941,964	+		PFLU_RS26580	0.48	-0.8
5,942,024	+		PFLU_RS26580	0.56	-0.8
5,942,025	-		PFLU_RS26580	0.56	+1.7
5,942,272	-		PFLU_RS26580	0.89	-0.1
5,942,345	+				-0.3
5,942,345	+				+2.3
5,942,345	+				+1.5
5,942,345	+				-1.7
5,942,345	+				+0.4
5,942,346	-				+0.1
5,942,346	-				-0.5
5,942,352	+				+0.0
5,942,353	-				+0.0
5,942,371	+				-2.4
5,942,371	+				+0.3
5,942,371	+				+2.1
5,942,371	+				-0.1
5,942,371	+				-0.8
5,942,371	+				-0.3
5,942,371	+				+1.3
5,942,371	+				-2.0
5,942,371	+				+1.1
5,942,371	+				+1.2
5,942,371	+				-1.0
5,942,371	+				+1.5
5,942,371	+				+0.8
5,942,371	+				+2.5
5,942,371	+				+0.0
5,942,371	+				+0.7
5,942,371	+				+0.7
5,942,371	+				+1.3
5,942,371	+				+0.9
5,942,371	+				-0.5
5,942,371	+				-1.0
5,942,371	+				-1.3
5,942,371	+				+1.7
5,942,372	-				+1.9
5,942,372	-				-0.8
5,942,372	-				-1.4
5,942,372	-				+1.3
5,942,372	-				-0.0
5,942,372	-				-1.5
5,942,372	-				-0.1
5,942,372	-				-0.5
5,942,372	-				-1.8
5,942,372	-				+0.7
5,942,372	-				-1.6
5,942,372	-				-0.9
5,942,372	-				-0.7
5,942,372	-				-0.3
5,942,372	-				+0.7
5,942,372	-				+0.6
5,942,372	-				-1.8
5,942,372	-				+1.6
5,942,372	-				-2.1
5,942,386	+				+1.7
5,942,386	+				+4.0
5,942,387	-				+2.3
5,942,387	-				+1.1
5,942,387	-				+1.2
5,942,393	+				-1.7
5,942,393	+				-1.4
5,942,393	+				-0.3
5,942,394	-				-1.4
5,942,403	+				+0.2
5,942,404	-				+1.3
5,942,416	+				+0.1
5,942,416	+				+0.7
5,942,417	-				+2.2
5,942,458	+				-0.7
5,942,458	+				+1.0
5,942,458	+				+2.7
5,942,458	+				-1.7
5,942,458	+				-1.0
5,942,458	+				+1.7
5,942,458	+				-1.7
5,942,458	+				-1.9
5,942,458	+				-1.8
5,942,458	+				+0.3
5,942,459	-				-2.3
5,942,459	-				+1.9
5,942,459	-				-1.1
5,942,459	-				-1.2
5,942,459	-				+2.0
5,942,465	-				-0.3