Experiment: Betaine (C)(N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02830 and PFLU_RS02835 are separated by 124 nucleotides PFLU_RS02835 and PFLU_RS02840 are separated by 237 nucleotides
PFLU_RS02830: PFLU_RS02830 - AI-2E family transporter, at 647,881 to 648,894
_RS02830
PFLU_RS02835: PFLU_RS02835 - Hsp70 family protein, at 649,019 to 650,287
_RS02835
PFLU_RS02840: PFLU_RS02840 - DnaJ domain-containing protein, at 650,525 to 651,469
_RS02840
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 648.235 kb on + strand, within PFLU_RS02830 at 648.235 kb on + strand, within PFLU_RS02830 at 648.235 kb on + strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.236 kb on - strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.342 kb on + strand, within PFLU_RS02830 at 648.343 kb on - strand, within PFLU_RS02830 at 648.343 kb on - strand, within PFLU_RS02830 at 648.343 kb on - strand, within PFLU_RS02830 at 648.343 kb on - strand, within PFLU_RS02830 at 648.524 kb on + strand, within PFLU_RS02830 at 648.588 kb on - strand, within PFLU_RS02830 at 648.588 kb on - strand, within PFLU_RS02830 at 648.700 kb on + strand, within PFLU_RS02830 at 648.700 kb on + strand, within PFLU_RS02830 at 648.701 kb on - strand, within PFLU_RS02830 at 648.727 kb on + strand, within PFLU_RS02830 at 648.727 kb on + strand, within PFLU_RS02830 at 648.727 kb on + strand, within PFLU_RS02830 at 648.728 kb on - strand, within PFLU_RS02830 at 648.728 kb on - strand, within PFLU_RS02830 at 648.847 kb on + strand at 648.847 kb on + strand at 648.847 kb on + strand at 648.847 kb on + strand at 648.847 kb on + strand at 648.848 kb on - strand at 648.848 kb on - strand at 648.848 kb on - strand at 648.850 kb on + strand at 648.850 kb on + strand at 648.851 kb on - strand at 648.856 kb on + strand at 648.856 kb on + strand at 648.856 kb on + strand at 648.856 kb on + strand at 648.856 kb on + strand at 648.857 kb on - strand at 648.857 kb on - strand at 648.857 kb on - strand at 648.857 kb on - strand at 648.892 kb on + strand at 648.892 kb on + strand at 648.893 kb on - strand at 648.893 kb on - strand at 648.959 kb on + strand at 648.959 kb on + strand at 648.959 kb on + strand at 649.036 kb on + strand at 649.036 kb on + strand at 649.037 kb on - strand at 649.078 kb on + strand at 649.078 kb on + strand at 649.078 kb on + strand at 649.078 kb on + strand at 649.079 kb on - strand at 649.079 kb on - strand at 649.079 kb on - strand at 649.079 kb on - strand at 649.443 kb on + strand, within PFLU_RS02835 at 649.444 kb on - strand, within PFLU_RS02835 at 649.482 kb on + strand, within PFLU_RS02835 at 649.482 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.539 kb on + strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.540 kb on - strand, within PFLU_RS02835 at 649.717 kb on + strand, within PFLU_RS02835 at 649.717 kb on + strand, within PFLU_RS02835 at 649.717 kb on + strand, within PFLU_RS02835 at 649.718 kb on - strand, within PFLU_RS02835 at 649.773 kb on + strand, within PFLU_RS02835 at 649.774 kb on - strand, within PFLU_RS02835 at 649.801 kb on - strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.085 kb on + strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.086 kb on - strand, within PFLU_RS02835 at 650.097 kb on + strand, within PFLU_RS02835 at 650.097 kb on + strand, within PFLU_RS02835 at 650.121 kb on + strand, within PFLU_RS02835 at 650.122 kb on - strand, within PFLU_RS02835 at 650.122 kb on - strand, within PFLU_RS02835 at 650.325 kb on + strand at 650.325 kb on + strand at 650.325 kb on + strand at 650.325 kb on + strand at 650.325 kb on + strand at 650.325 kb on + strand at 650.325 kb on + strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.326 kb on - strand at 650.365 kb on - strand at 650.409 kb on + strand at 650.409 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.540 kb on + strand at 650.541 kb on - strand at 650.541 kb on - strand at 650.541 kb on - strand at 650.541 kb on - strand at 650.543 kb on + strand at 650.543 kb on + strand at 650.543 kb on + strand at 650.543 kb on + strand at 650.543 kb on + strand at 650.543 kb on + strand at 650.544 kb on - strand at 650.544 kb on - strand at 650.544 kb on - strand at 650.544 kb on - strand at 650.544 kb on - strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.618 kb on + strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.619 kb on - strand at 650.681 kb on + strand, within PFLU_RS02840 at 650.681 kb on + strand, within PFLU_RS02840 at 650.681 kb on + strand, within PFLU_RS02840 at 650.681 kb on + strand, within PFLU_RS02840 at 650.681 kb on + strand, within PFLU_RS02840 at 650.681 kb on + strand, within PFLU_RS02840 at 650.682 kb on - strand, within PFLU_RS02840 at 650.717 kb on + strand, within PFLU_RS02840 at 650.735 kb on + strand, within PFLU_RS02840 at 650.735 kb on + strand, within PFLU_RS02840 at 650.736 kb on - strand, within PFLU_RS02840 at 650.736 kb on - strand, within PFLU_RS02840 at 650.736 kb on - strand, within PFLU_RS02840 at 650.736 kb on - strand, within PFLU_RS02840 at 650.896 kb on + strand, within PFLU_RS02840 at 650.988 kb on - strand, within PFLU_RS02840 at 650.988 kb on - strand, within PFLU_RS02840 at 650.988 kb on - strand, within PFLU_RS02840 at 650.988 kb on - strand, within PFLU_RS02840 at 651.071 kb on - strand, within PFLU_RS02840 at 651.071 kb on - strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.128 kb on + strand, within PFLU_RS02840 at 651.129 kb on - strand, within PFLU_RS02840 at 651.129 kb on - strand, within PFLU_RS02840 at 651.129 kb on - strand, within PFLU_RS02840
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (C)(N); with MOPS; with chloride remove 648,235 + PFLU_RS02830 0.35 -1.9 648,235 + PFLU_RS02830 0.35 +0.6 648,235 + PFLU_RS02830 0.35 +0.5 648,236 - PFLU_RS02830 0.35 +1.1 648,236 - PFLU_RS02830 0.35 -2.4 648,236 - PFLU_RS02830 0.35 -1.5 648,236 - PFLU_RS02830 0.35 -1.0 648,236 - PFLU_RS02830 0.35 -0.7 648,236 - PFLU_RS02830 0.35 -0.4 648,342 + PFLU_RS02830 0.45 +1.0 648,342 + PFLU_RS02830 0.45 -1.0 648,342 + PFLU_RS02830 0.45 -0.9 648,342 + PFLU_RS02830 0.45 -1.1 648,342 + PFLU_RS02830 0.45 -1.0 648,342 + PFLU_RS02830 0.45 -0.7 648,343 - PFLU_RS02830 0.46 -1.6 648,343 - PFLU_RS02830 0.46 -0.0 648,343 - PFLU_RS02830 0.46 -1.0 648,343 - PFLU_RS02830 0.46 +1.7 648,524 + PFLU_RS02830 0.63 +0.0 648,588 - PFLU_RS02830 0.70 +2.4 648,588 - PFLU_RS02830 0.70 -0.2 648,700 + PFLU_RS02830 0.81 +0.8 648,700 + PFLU_RS02830 0.81 -3.0 648,701 - PFLU_RS02830 0.81 +2.2 648,727 + PFLU_RS02830 0.83 -0.6 648,727 + PFLU_RS02830 0.83 -1.3 648,727 + PFLU_RS02830 0.83 +0.1 648,728 - PFLU_RS02830 0.84 +0.9 648,728 - PFLU_RS02830 0.84 +0.8 648,847 + -0.2 648,847 + -0.0 648,847 + -1.7 648,847 + +0.6 648,847 + +0.7 648,848 - +0.4 648,848 - +1.4 648,848 - +1.2 648,850 + -0.8 648,850 + +1.1 648,851 - +0.8 648,856 + -2.8 648,856 + -1.5 648,856 + +2.3 648,856 + +2.2 648,856 + -1.4 648,857 - -2.0 648,857 - +1.5 648,857 - +0.7 648,857 - -0.8 648,892 + -1.0 648,892 + -1.0 648,893 - +0.8 648,893 - -2.3 648,959 + +1.4 648,959 + -0.4 648,959 + -3.1 649,036 + +0.3 649,036 + -1.2 649,037 - -0.2 649,078 + -1.0 649,078 + -1.2 649,078 + +5.0 649,078 + +1.5 649,079 - -0.4 649,079 - +1.2 649,079 - -1.3 649,079 - -0.3 649,443 + PFLU_RS02835 0.33 -0.4 649,444 - PFLU_RS02835 0.33 -2.2 649,482 + PFLU_RS02835 0.36 -1.0 649,482 + PFLU_RS02835 0.36 +1.3 649,539 + PFLU_RS02835 0.41 +0.2 649,539 + PFLU_RS02835 0.41 +0.0 649,539 + PFLU_RS02835 0.41 +2.3 649,539 + PFLU_RS02835 0.41 -0.2 649,539 + PFLU_RS02835 0.41 -0.3 649,539 + PFLU_RS02835 0.41 +2.0 649,539 + PFLU_RS02835 0.41 +1.6 649,539 + PFLU_RS02835 0.41 -0.8 649,539 + PFLU_RS02835 0.41 -1.5 649,539 + PFLU_RS02835 0.41 +2.6 649,539 + PFLU_RS02835 0.41 +2.6 649,539 + PFLU_RS02835 0.41 -0.6 649,539 + PFLU_RS02835 0.41 +2.5 649,539 + PFLU_RS02835 0.41 -1.4 649,539 + PFLU_RS02835 0.41 +0.1 649,539 + PFLU_RS02835 0.41 -0.6 649,540 - PFLU_RS02835 0.41 -1.0 649,540 - PFLU_RS02835 0.41 -0.4 649,540 - PFLU_RS02835 0.41 -1.3 649,540 - PFLU_RS02835 0.41 +1.4 649,540 - PFLU_RS02835 0.41 +0.4 649,540 - PFLU_RS02835 0.41 +2.2 649,540 - PFLU_RS02835 0.41 -1.1 649,540 - PFLU_RS02835 0.41 +1.2 649,540 - PFLU_RS02835 0.41 -1.7 649,540 - PFLU_RS02835 0.41 -2.0 649,540 - PFLU_RS02835 0.41 +2.4 649,540 - PFLU_RS02835 0.41 -0.5 649,540 - PFLU_RS02835 0.41 +1.8 649,540 - PFLU_RS02835 0.41 -2.5 649,540 - PFLU_RS02835 0.41 -2.1 649,540 - PFLU_RS02835 0.41 -1.2 649,540 - PFLU_RS02835 0.41 +2.4 649,540 - PFLU_RS02835 0.41 -0.5 649,540 - PFLU_RS02835 0.41 -1.7 649,717 + PFLU_RS02835 0.55 -1.6 649,717 + PFLU_RS02835 0.55 +0.0 649,717 + PFLU_RS02835 0.55 +0.3 649,718 - PFLU_RS02835 0.55 -1.3 649,773 + PFLU_RS02835 0.59 -0.3 649,774 - PFLU_RS02835 0.59 +1.7 649,801 - PFLU_RS02835 0.62 -1.1 650,085 + PFLU_RS02835 0.84 -1.1 650,085 + PFLU_RS02835 0.84 -1.4 650,085 + PFLU_RS02835 0.84 +1.0 650,085 + PFLU_RS02835 0.84 -1.5 650,085 + PFLU_RS02835 0.84 +1.0 650,085 + PFLU_RS02835 0.84 +0.8 650,085 + PFLU_RS02835 0.84 +1.9 650,085 + PFLU_RS02835 0.84 -0.6 650,085 + PFLU_RS02835 0.84 +0.9 650,085 + PFLU_RS02835 0.84 +0.0 650,085 + PFLU_RS02835 0.84 -1.6 650,085 + PFLU_RS02835 0.84 -0.4 650,085 + PFLU_RS02835 0.84 -2.5 650,085 + PFLU_RS02835 0.84 +0.4 650,085 + PFLU_RS02835 0.84 -1.6 650,085 + PFLU_RS02835 0.84 +1.4 650,086 - PFLU_RS02835 0.84 +0.4 650,086 - PFLU_RS02835 0.84 +1.2 650,086 - PFLU_RS02835 0.84 -1.1 650,086 - PFLU_RS02835 0.84 -0.4 650,086 - PFLU_RS02835 0.84 -0.1 650,086 - PFLU_RS02835 0.84 +2.8 650,086 - PFLU_RS02835 0.84 +0.4 650,086 - PFLU_RS02835 0.84 -1.6 650,086 - PFLU_RS02835 0.84 -0.8 650,086 - PFLU_RS02835 0.84 +0.8 650,086 - PFLU_RS02835 0.84 -2.9 650,086 - PFLU_RS02835 0.84 +3.6 650,086 - PFLU_RS02835 0.84 +1.4 650,086 - PFLU_RS02835 0.84 -1.5 650,086 - PFLU_RS02835 0.84 -0.6 650,097 + PFLU_RS02835 0.85 -1.2 650,097 + PFLU_RS02835 0.85 -1.0 650,121 + PFLU_RS02835 0.87 +1.0 650,122 - PFLU_RS02835 0.87 +0.3 650,122 - PFLU_RS02835 0.87 -0.8 650,325 + +0.8 650,325 + +1.6 650,325 + -2.1 650,325 + +2.7 650,325 + +1.6 650,325 + +2.7 650,325 + -2.3 650,326 - -1.1 650,326 - +0.4 650,326 - +2.5 650,326 - +0.4 650,326 - +0.0 650,326 - -0.5 650,326 - +0.7 650,326 - +1.7 650,365 - +0.9 650,409 + +0.0 650,409 + -1.1 650,540 + -1.1 650,540 + -1.1 650,540 + -0.6 650,540 + +5.6 650,540 + -0.6 650,540 + +0.2 650,540 + -0.9 650,540 + -0.1 650,541 - +0.2 650,541 - -2.4 650,541 - -0.0 650,541 - -1.2 650,543 + -0.5 650,543 + +0.0 650,543 + -1.7 650,543 + +0.0 650,543 + -1.2 650,543 + -1.2 650,544 - +2.0 650,544 - -1.4 650,544 - -0.9 650,544 - -0.1 650,544 - +1.1 650,618 + +1.1 650,618 + -2.3 650,618 + -0.4 650,618 + -0.2 650,618 + -1.0 650,618 + +2.3 650,618 + +0.6 650,618 + -0.9 650,618 + -2.3 650,618 + -0.1 650,618 + +1.4 650,618 + +0.6 650,618 + -0.6 650,619 - +0.9 650,619 - -1.7 650,619 - -0.9 650,619 - +0.7 650,619 - -2.2 650,619 - +1.4 650,619 - -0.7 650,619 - -0.2 650,681 + PFLU_RS02840 0.17 +1.3 650,681 + PFLU_RS02840 0.17 +0.9 650,681 + PFLU_RS02840 0.17 -0.3 650,681 + PFLU_RS02840 0.17 +1.4 650,681 + PFLU_RS02840 0.17 +1.1 650,681 + PFLU_RS02840 0.17 +0.2 650,682 - PFLU_RS02840 0.17 +0.6 650,717 + PFLU_RS02840 0.20 -0.2 650,735 + PFLU_RS02840 0.22 +2.5 650,735 + PFLU_RS02840 0.22 -2.5 650,736 - PFLU_RS02840 0.22 -2.0 650,736 - PFLU_RS02840 0.22 +0.6 650,736 - PFLU_RS02840 0.22 -0.7 650,736 - PFLU_RS02840 0.22 -2.4 650,896 + PFLU_RS02840 0.39 +0.0 650,988 - PFLU_RS02840 0.49 +2.6 650,988 - PFLU_RS02840 0.49 +1.0 650,988 - PFLU_RS02840 0.49 +0.6 650,988 - PFLU_RS02840 0.49 -2.2 651,071 - PFLU_RS02840 0.58 -0.4 651,071 - PFLU_RS02840 0.58 -2.2 651,128 + PFLU_RS02840 0.64 -0.4 651,128 + PFLU_RS02840 0.64 -1.4 651,128 + PFLU_RS02840 0.64 +0.0 651,128 + PFLU_RS02840 0.64 -1.3 651,128 + PFLU_RS02840 0.64 +0.4 651,128 + PFLU_RS02840 0.64 +0.7 651,128 + PFLU_RS02840 0.64 +0.8 651,129 - PFLU_RS02840 0.64 -0.2 651,129 - PFLU_RS02840 0.64 -1.6 651,129 - PFLU_RS02840 0.64 -2.1
Or see this region's nucleotide sequence