Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25115

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
5,614,576	+		PFLU_RS25110	0.55	+1.3
5,614,588	+		PFLU_RS25110	0.56	-0.7
5,614,588	+		PFLU_RS25110	0.56	-2.4
5,614,589	-		PFLU_RS25110	0.56	+0.8
5,614,589	-		PFLU_RS25110	0.56	+0.8
5,614,589	-		PFLU_RS25110	0.56	-0.9
5,614,589	-		PFLU_RS25110	0.56	+1.7
5,614,589	-		PFLU_RS25110	0.56	+1.5
5,614,589	-		PFLU_RS25110	0.56	-1.7
5,614,620	+		PFLU_RS25110	0.58	+0.3
5,614,621	-		PFLU_RS25110	0.58	-0.3
5,614,745	+		PFLU_RS25110	0.64	-0.7
5,614,745	+		PFLU_RS25110	0.64	+1.4
5,614,745	+		PFLU_RS25110	0.64	+0.7
5,614,745	+		PFLU_RS25110	0.64	+0.7
5,614,745	+		PFLU_RS25110	0.64	+1.0
5,614,746	-		PFLU_RS25110	0.64	-0.3
5,614,746	-		PFLU_RS25110	0.64	-0.3
5,614,746	-		PFLU_RS25110	0.64	+2.0
5,614,746	-		PFLU_RS25110	0.64	-0.9
5,614,746	-		PFLU_RS25110	0.64	+0.7
5,614,783	+		PFLU_RS25110	0.66	+0.4
5,614,784	-		PFLU_RS25110	0.66	-1.7
5,614,784	-		PFLU_RS25110	0.66	+0.4
5,614,784	-		PFLU_RS25110	0.66	-0.9
5,614,903	+		PFLU_RS25110	0.72	-0.7
5,614,903	+		PFLU_RS25110	0.72	-0.7
5,614,903	+		PFLU_RS25110	0.72	-0.2
5,614,903	+		PFLU_RS25110	0.72	-1.8
5,614,904	-		PFLU_RS25110	0.72	-1.3
5,614,904	-		PFLU_RS25110	0.72	-1.6
5,614,904	-		PFLU_RS25110	0.72	-2.1
5,614,927	+		PFLU_RS25110	0.73	-1.3
5,614,927	+		PFLU_RS25110	0.73	-0.4
5,614,927	+		PFLU_RS25110	0.73	+1.4
5,614,927	+		PFLU_RS25110	0.73	-0.1
5,614,927	+		PFLU_RS25110	0.73	-0.3
5,614,927	+		PFLU_RS25110	0.73	+0.3
5,614,928	-		PFLU_RS25110	0.73	-1.3
5,614,928	-		PFLU_RS25110	0.73	-2.3
5,614,928	-		PFLU_RS25110	0.73	+1.7
5,614,928	-		PFLU_RS25110	0.73	+0.4
5,614,972	+		PFLU_RS25110	0.75	+0.9
5,614,972	+		PFLU_RS25110	0.75	-0.6
5,614,972	+		PFLU_RS25110	0.75	-2.3
5,614,973	-		PFLU_RS25110	0.75	-1.6
5,614,973	-		PFLU_RS25110	0.75	-0.8
5,615,070	+		PFLU_RS25110	0.80	-0.6
5,615,070	+		PFLU_RS25110	0.80	-1.3
5,615,070	+		PFLU_RS25110	0.80	+1.2
5,615,070	+		PFLU_RS25110	0.80	-0.6
5,615,070	+		PFLU_RS25110	0.80	+1.1
5,615,070	+		PFLU_RS25110	0.80	+0.4
5,615,070	+		PFLU_RS25110	0.80	-0.9
5,615,070	+		PFLU_RS25110	0.80	-0.7
5,615,071	-		PFLU_RS25110	0.80	-1.1
5,615,071	-		PFLU_RS25110	0.80	+2.3
5,615,071	-		PFLU_RS25110	0.80	+3.2
5,615,073	+		PFLU_RS25110	0.80	-2.0
5,615,073	+		PFLU_RS25110	0.80	-0.7
5,615,074	-		PFLU_RS25110	0.80	-0.3
5,615,074	-		PFLU_RS25110	0.80	+1.3
5,615,074	-		PFLU_RS25110	0.80	+0.7
5,615,400	+				+2.3
5,615,401	-				-1.3
5,615,401	-				+3.8
5,615,401	-				+0.7
5,615,401	-				+1.1
5,615,477	+				+0.3
5,615,477	+				+0.3
5,615,477	+				+0.4
5,615,477	+				+2.3
5,615,477	+				+0.7
5,615,477	+				+0.1
5,615,477	+				-1.4
5,615,477	+				+0.9
5,615,477	+				-0.7
5,615,477	+				+1.1
5,615,478	-				+1.3
5,615,478	-				-0.1
5,615,478	-				+0.4
5,615,478	-				+0.7
5,615,478	-				+2.0
5,615,478	-				+0.1
5,615,478	-				-2.1
5,615,478	-				-0.6
5,615,501	+				-0.4
5,615,501	+				-2.2
5,615,501	+				-1.2
5,615,502	-				+0.4
5,615,502	-				+1.7
5,615,591	+		PFLU_RS25115	0.31	+0.5
5,615,591	+		PFLU_RS25115	0.31	+0.6
5,615,592	-		PFLU_RS25115	0.31	+1.5
5,615,648	+		PFLU_RS25115	0.46	+0.0
5,615,648	+		PFLU_RS25115	0.46	+0.8
5,615,648	+		PFLU_RS25115	0.46	-0.9
5,615,649	-		PFLU_RS25115	0.46	+1.3
5,615,654	+		PFLU_RS25115	0.47	+0.5
5,615,654	+		PFLU_RS25115	0.47	-1.4
5,615,655	-		PFLU_RS25115	0.48	+1.8
5,615,655	-		PFLU_RS25115	0.48	-1.7
5,615,818	+				+1.4
5,615,818	+				+0.3
5,615,819	-				-1.4
5,615,836	+				-1.2
5,615,836	+				-2.1
5,615,837	-				-0.5
5,615,837	-				-0.3
5,615,837	-				-2.2
5,615,837	-				+2.5
5,615,843	+				-1.3
5,615,843	+				-3.0
5,615,843	+				+0.3
5,615,844	-				+0.7
5,615,883	+				+0.3
5,615,883	+				-0.1
5,615,883	+				-1.2
5,615,883	+				-2.3
5,615,883	+				-0.8
5,615,884	-				+0.3
5,615,884	-				-1.3
5,615,891	+				-0.9
5,615,927	+				-1.3
5,615,928	-				-0.2
5,615,978	+				+1.7
5,615,978	+				-0.3
5,616,003	+				-1.7
5,616,003	+				-2.1
5,616,004	-				-0.6
5,616,025	+				+0.1
5,616,025	+				-1.3
5,616,026	-				-0.3
5,616,026	-				+0.1
5,616,056	-				-0.5
5,616,156	+		PFLU_RS25120	0.32	+0.7
5,616,156	+		PFLU_RS25120	0.32	-0.2
5,616,157	-		PFLU_RS25120	0.33	-2.4
5,616,157	-		PFLU_RS25120	0.33	-0.1
5,616,291	-		PFLU_RS25120	0.68	-1.0
5,616,414	+				+0.2
5,616,415	-				-0.7
5,616,415	-				+2.8
5,616,415	-				+5.8
5,616,415	-				+1.3
5,616,415	-				+0.6
5,616,465	+				+1.9
5,616,465	+				-0.4
5,616,466	-				+0.3
5,616,466	-				-0.3
5,616,749	-		PFLU_RS25125	0.23	-2.1
5,616,759	+		PFLU_RS25125	0.24	-0.2
5,616,759	+		PFLU_RS25125	0.24	+1.8
5,616,759	+		PFLU_RS25125	0.24	-0.7
5,616,759	+		PFLU_RS25125	0.24	+0.0
5,616,759	+		PFLU_RS25125	0.24	+1.7
5,616,759	+		PFLU_RS25125	0.24	+2.4
5,616,759	+		PFLU_RS25125	0.24	+0.3
5,616,760	-		PFLU_RS25125	0.25	+1.3
5,616,760	-		PFLU_RS25125	0.25	+0.8
5,616,760	-		PFLU_RS25125	0.25	-0.9
5,616,760	-		PFLU_RS25125	0.25	-0.7
5,616,760	-		PFLU_RS25125	0.25	-1.6
5,616,762	+		PFLU_RS25125	0.25	+1.8
5,616,762	+		PFLU_RS25125	0.25	+1.9
5,616,762	+		PFLU_RS25125	0.25	+1.7
5,616,763	-		PFLU_RS25125	0.25	+1.8
5,616,771	+		PFLU_RS25125	0.26	+1.6
5,616,771	+		PFLU_RS25125	0.26	+1.6
5,616,772	-		PFLU_RS25125	0.27	+1.0
5,616,790	+		PFLU_RS25125	0.29	-2.8
5,616,791	-		PFLU_RS25125	0.30	-0.6
5,616,791	-		PFLU_RS25125	0.30	+0.3
5,616,795	+		PFLU_RS25125	0.30	-0.9
5,616,795	+		PFLU_RS25125	0.30	-0.7
5,616,795	+		PFLU_RS25125	0.30	+2.7
5,616,795	+		PFLU_RS25125	0.30	+1.2
5,616,796	-		PFLU_RS25125	0.30	+2.6
5,616,796	-		PFLU_RS25125	0.30	-1.9
5,616,796	-		PFLU_RS25125	0.30	+1.2
5,616,796	-		PFLU_RS25125	0.30	-1.2
5,616,796	-		PFLU_RS25125	0.30	-0.8