Experiment: Betaine (C)(N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03330 and PFLU_RS31240 are separated by 247 nucleotides PFLU_RS31240 and PFLU_RS03335 are separated by 140 nucleotides PFLU_RS03335 and PFLU_RS03340 are separated by 81 nucleotides PFLU_RS03340 and PFLU_RS03345 are separated by 30 nucleotides PFLU_RS03345 and PFLU_RS03350 are separated by 242 nucleotides
PFLU_RS03330: PFLU_RS03330 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 766,411 to 767,904
_RS03330
PFLU_RS31240: PFLU_RS31240 - hypothetical protein, at 768,152 to 768,390
_RS31240
PFLU_RS03335: PFLU_RS03335 - 16S ribosomal RNA, at 768,531 to 770,068
_RS03335
PFLU_RS03340: PFLU_RS03340 - tRNA-Ile, at 770,150 to 770,226
_RS03340
PFLU_RS03345: PFLU_RS03345 - tRNA-Ala, at 770,257 to 770,332
_RS03345
PFLU_RS03350: PFLU_RS03350 - 23S ribosomal RNA, at 770,575 to 773,490
_RS03350
Position (kb) 768
769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 767.541 kb on + strand, within PFLU_RS03330 at 767.541 kb on + strand, within PFLU_RS03330 at 767.541 kb on + strand, within PFLU_RS03330 at 767.541 kb on + strand, within PFLU_RS03330 at 767.541 kb on + strand, within PFLU_RS03330 at 767.541 kb on + strand, within PFLU_RS03330 at 767.542 kb on - strand, within PFLU_RS03330 at 767.542 kb on - strand, within PFLU_RS03330 at 767.542 kb on - strand, within PFLU_RS03330 at 767.542 kb on - strand, within PFLU_RS03330 at 767.542 kb on - strand, within PFLU_RS03330 at 767.545 kb on + strand, within PFLU_RS03330 at 767.545 kb on + strand, within PFLU_RS03330 at 767.545 kb on + strand, within PFLU_RS03330 at 767.545 kb on + strand, within PFLU_RS03330 at 767.545 kb on + strand, within PFLU_RS03330 at 767.546 kb on - strand, within PFLU_RS03330 at 767.546 kb on - strand, within PFLU_RS03330 at 767.546 kb on - strand, within PFLU_RS03330 at 767.546 kb on - strand, within PFLU_RS03330 at 767.546 kb on - strand, within PFLU_RS03330 at 767.632 kb on + strand, within PFLU_RS03330 at 767.632 kb on + strand, within PFLU_RS03330 at 767.632 kb on + strand, within PFLU_RS03330 at 767.633 kb on - strand, within PFLU_RS03330 at 767.633 kb on - strand, within PFLU_RS03330 at 767.633 kb on - strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.643 kb on + strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.644 kb on - strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.649 kb on + strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.650 kb on - strand, within PFLU_RS03330 at 767.681 kb on + strand, within PFLU_RS03330 at 767.682 kb on - strand, within PFLU_RS03330 at 767.682 kb on - strand, within PFLU_RS03330 at 767.682 kb on - strand, within PFLU_RS03330 at 767.747 kb on - strand, within PFLU_RS03330 at 767.797 kb on + strand at 767.797 kb on + strand at 767.798 kb on - strand at 767.798 kb on - strand at 767.821 kb on + strand at 767.821 kb on + strand at 767.821 kb on + strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.822 kb on - strand at 767.823 kb on + strand at 767.895 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.900 kb on + strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.901 kb on - strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.902 kb on + strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.903 kb on - strand at 767.912 kb on + strand at 767.912 kb on + strand at 767.912 kb on + strand at 767.912 kb on + strand at 767.912 kb on + strand at 767.912 kb on + strand at 767.913 kb on - strand at 767.913 kb on - strand at 767.913 kb on - strand at 767.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (C)(N); with MOPS; with chloride remove 767,541 + PFLU_RS03330 0.76 +0.7 767,541 + PFLU_RS03330 0.76 -0.3 767,541 + PFLU_RS03330 0.76 -0.6 767,541 + PFLU_RS03330 0.76 -1.9 767,541 + PFLU_RS03330 0.76 +0.8 767,541 + PFLU_RS03330 0.76 +0.8 767,542 - PFLU_RS03330 0.76 -1.5 767,542 - PFLU_RS03330 0.76 -0.8 767,542 - PFLU_RS03330 0.76 +1.4 767,542 - PFLU_RS03330 0.76 -0.9 767,542 - PFLU_RS03330 0.76 +3.2 767,545 + PFLU_RS03330 0.76 +0.7 767,545 + PFLU_RS03330 0.76 +0.3 767,545 + PFLU_RS03330 0.76 -1.6 767,545 + PFLU_RS03330 0.76 +2.1 767,545 + PFLU_RS03330 0.76 +0.7 767,546 - PFLU_RS03330 0.76 -2.1 767,546 - PFLU_RS03330 0.76 -2.3 767,546 - PFLU_RS03330 0.76 +1.0 767,546 - PFLU_RS03330 0.76 +2.3 767,546 - PFLU_RS03330 0.76 -0.3 767,632 + PFLU_RS03330 0.82 +0.2 767,632 + PFLU_RS03330 0.82 -2.1 767,632 + PFLU_RS03330 0.82 +2.9 767,633 - PFLU_RS03330 0.82 +1.1 767,633 - PFLU_RS03330 0.82 -0.7 767,633 - PFLU_RS03330 0.82 +0.4 767,643 + PFLU_RS03330 0.82 +0.7 767,643 + PFLU_RS03330 0.82 -2.3 767,643 + PFLU_RS03330 0.82 +1.0 767,643 + PFLU_RS03330 0.82 +0.6 767,643 + PFLU_RS03330 0.82 -1.8 767,643 + PFLU_RS03330 0.82 +1.6 767,643 + PFLU_RS03330 0.82 -0.3 767,643 + PFLU_RS03330 0.82 -3.0 767,643 + PFLU_RS03330 0.82 +0.0 767,643 + PFLU_RS03330 0.82 -0.8 767,643 + PFLU_RS03330 0.82 +1.3 767,644 - PFLU_RS03330 0.83 +0.9 767,644 - PFLU_RS03330 0.83 +2.0 767,644 - PFLU_RS03330 0.83 +0.6 767,644 - PFLU_RS03330 0.83 -1.3 767,644 - PFLU_RS03330 0.83 -1.8 767,644 - PFLU_RS03330 0.83 +0.8 767,644 - PFLU_RS03330 0.83 +0.5 767,644 - PFLU_RS03330 0.83 +1.7 767,649 + PFLU_RS03330 0.83 -0.6 767,649 + PFLU_RS03330 0.83 +0.7 767,649 + PFLU_RS03330 0.83 +0.2 767,649 + PFLU_RS03330 0.83 +0.7 767,649 + PFLU_RS03330 0.83 +0.4 767,649 + PFLU_RS03330 0.83 +0.1 767,649 + PFLU_RS03330 0.83 -1.7 767,650 - PFLU_RS03330 0.83 -0.3 767,650 - PFLU_RS03330 0.83 -1.8 767,650 - PFLU_RS03330 0.83 +1.5 767,650 - PFLU_RS03330 0.83 -1.4 767,650 - PFLU_RS03330 0.83 +2.2 767,650 - PFLU_RS03330 0.83 -0.5 767,650 - PFLU_RS03330 0.83 +1.3 767,650 - PFLU_RS03330 0.83 -0.7 767,650 - PFLU_RS03330 0.83 +0.8 767,650 - PFLU_RS03330 0.83 -0.9 767,681 + PFLU_RS03330 0.85 -0.5 767,682 - PFLU_RS03330 0.85 -1.7 767,682 - PFLU_RS03330 0.85 +2.3 767,682 - PFLU_RS03330 0.85 -1.1 767,747 - PFLU_RS03330 0.89 +2.3 767,797 + +0.4 767,797 + +1.0 767,798 - -0.7 767,798 - -2.4 767,821 + +3.4 767,821 + -2.2 767,821 + +2.3 767,822 - -1.1 767,822 - +1.7 767,822 - +4.1 767,822 - +0.0 767,822 - -0.2 767,822 - -1.6 767,822 - -2.4 767,823 + +0.7 767,895 + -1.0 767,900 + +1.0 767,900 + -0.8 767,900 + -1.6 767,900 + -1.6 767,900 + +1.1 767,900 + -1.6 767,900 + +1.1 767,900 + +0.0 767,900 + -1.1 767,900 + +2.6 767,901 - -1.3 767,901 - -2.4 767,901 - +3.3 767,901 - +0.2 767,901 - -0.3 767,901 - +1.3 767,901 - +0.2 767,901 - +1.4 767,901 - -1.9 767,901 - -1.8 767,901 - -1.7 767,902 + +0.1 767,902 + -2.1 767,902 + -2.1 767,902 + -2.5 767,902 + +0.9 767,902 + -0.5 767,902 + +0.9 767,902 + +0.5 767,903 - -1.1 767,903 - -0.1 767,903 - +3.1 767,903 - -1.1 767,903 - -0.5 767,903 - -1.7 767,912 + +1.2 767,912 + -1.6 767,912 + +0.6 767,912 + +0.6 767,912 + -0.8 767,912 + +1.2 767,913 - -1.3 767,913 - -0.3 767,913 - -0.3 767,968 + -1.6
Or see this region's nucleotide sequence