Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08620

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
1,918,767	+		PFLU_RS08610	0.30	-2.9
1,918,767	+		PFLU_RS08610	0.30	-1.3
1,918,767	+		PFLU_RS08610	0.30	-0.2
1,918,767	+		PFLU_RS08610	0.30	+0.4
1,918,767	+		PFLU_RS08610	0.30	+0.9
1,918,768	-		PFLU_RS08610	0.30	+1.9
1,918,768	-		PFLU_RS08610	0.30	-2.1
1,918,768	-		PFLU_RS08610	0.30	-1.6
1,918,768	-		PFLU_RS08610	0.30	-0.5
1,918,833	+		PFLU_RS08610	0.38	+2.1
1,918,833	+		PFLU_RS08610	0.38	+1.0
1,918,833	+		PFLU_RS08610	0.38	+0.5
1,918,833	+		PFLU_RS08610	0.38	-2.1
1,918,833	+		PFLU_RS08610	0.38	-0.4
1,918,834	-		PFLU_RS08610	0.38	-1.3
1,918,834	-		PFLU_RS08610	0.38	+0.2
1,918,834	-		PFLU_RS08610	0.38	-0.9
1,918,834	-		PFLU_RS08610	0.38	+1.7
1,918,834	-		PFLU_RS08610	0.38	+0.9
1,918,834	-		PFLU_RS08610	0.38	+0.7
1,918,834	-		PFLU_RS08610	0.38	+4.3
1,918,834	-		PFLU_RS08610	0.38	+0.1
1,918,916	+		PFLU_RS08610	0.47	-0.3
1,918,916	+		PFLU_RS08610	0.47	+0.2
1,918,916	+		PFLU_RS08610	0.47	-1.9
1,918,916	+		PFLU_RS08610	0.47	-0.9
1,918,965	+		PFLU_RS08610	0.53	-2.1
1,918,965	+		PFLU_RS08610	0.53	-0.7
1,919,054	+		PFLU_RS08610	0.63	-1.9
1,919,054	+		PFLU_RS08610	0.63	+0.3
1,919,054	+		PFLU_RS08610	0.63	+0.6
1,919,054	+		PFLU_RS08610	0.63	+0.7
1,919,054	+		PFLU_RS08610	0.63	+0.8
1,919,054	+		PFLU_RS08610	0.63	-2.3
1,919,054	+		PFLU_RS08610	0.63	-0.2
1,919,054	+		PFLU_RS08610	0.63	-2.2
1,919,054	+		PFLU_RS08610	0.63	+2.7
1,919,054	+		PFLU_RS08610	0.63	-0.2
1,919,054	+		PFLU_RS08610	0.63	-1.2
1,919,054	+		PFLU_RS08610	0.63	+0.1
1,919,054	+		PFLU_RS08610	0.63	-0.5
1,919,054	+		PFLU_RS08610	0.63	-1.6
1,919,054	+		PFLU_RS08610	0.63	-0.9
1,919,055	-		PFLU_RS08610	0.63	-0.7
1,919,055	-		PFLU_RS08610	0.63	+1.9
1,919,055	-		PFLU_RS08610	0.63	-0.7
1,919,055	-		PFLU_RS08610	0.63	-1.7
1,919,055	-		PFLU_RS08610	0.63	-1.3
1,919,055	-		PFLU_RS08610	0.63	+0.5
1,919,055	-		PFLU_RS08610	0.63	-1.2
1,919,055	-		PFLU_RS08610	0.63	-1.2
1,919,158	+		PFLU_RS08610	0.74	-0.1
1,919,158	+		PFLU_RS08610	0.74	+1.3
1,919,159	-		PFLU_RS08610	0.74	-2.2
1,919,159	-		PFLU_RS08610	0.74	+0.8
1,919,159	-		PFLU_RS08610	0.74	-1.9
1,919,159	-		PFLU_RS08610	0.74	-2.0
1,919,234	+		PFLU_RS08610	0.83	-1.5
1,919,234	+		PFLU_RS08610	0.83	-1.0
1,919,234	+		PFLU_RS08610	0.83	-2.2
1,919,234	+		PFLU_RS08610	0.83	-1.6
1,919,235	-		PFLU_RS08610	0.83	+1.8
1,919,235	-		PFLU_RS08610	0.83	+2.0
1,919,235	-		PFLU_RS08610	0.83	-0.9
1,919,253	+		PFLU_RS08610	0.85	+0.0
1,919,253	+		PFLU_RS08610	0.85	-0.7
1,919,287	-		PFLU_RS08610	0.89	+0.3
1,919,320	+				+1.3
1,919,320	+				+1.5
1,919,320	+				-0.5
1,919,437	+				+1.0
1,919,437	+				-1.6
1,919,444	+				-0.5
1,919,444	+				+1.1
1,919,444	+				-1.3
1,919,444	+				+1.6
1,919,444	+				+0.5
1,919,445	-				-0.9
1,919,445	-				+1.1
1,919,445	-				-0.3
1,919,445	-				-1.7
1,919,516	+		PFLU_RS08615	0.33	-1.2
1,919,516	+		PFLU_RS08615	0.33	+0.7
1,919,516	+		PFLU_RS08615	0.33	-0.4
1,919,537	+		PFLU_RS08615	0.42	-1.1
1,919,537	+		PFLU_RS08615	0.42	+0.9
1,919,537	+		PFLU_RS08615	0.42	+1.2
1,919,537	+		PFLU_RS08615	0.42	-2.0
1,919,538	-		PFLU_RS08615	0.43	-0.2
1,919,684	+				-1.5
1,919,684	+				-0.7
1,919,684	+				-1.2
1,919,685	-				-0.5
1,919,685	-				+0.7
1,919,685	-				+0.4
1,919,694	+				+0.8
1,919,694	+				+0.5
1,919,694	+				+0.5
1,919,694	+				-0.1
1,919,695	-				+0.1
1,919,695	-				+0.1
1,919,695	-				+1.1
1,919,771	+				-0.2
1,919,771	+				+0.2
1,919,785	+				-1.0
1,919,785	+				+0.5
1,919,785	+				-1.2
1,919,785	+				-0.5
1,919,785	+				-0.3
1,919,786	-				-0.5
1,919,788	+				-0.9
1,919,788	+				+2.6
1,919,788	+				-2.2
1,919,788	+				-1.5
1,919,788	+				-1.7
1,919,788	+				-1.3
1,919,788	+				+1.6
1,919,788	+				-0.1
1,919,788	+				+0.1
1,919,789	-				+1.1
1,919,789	-				-0.1
1,919,789	-				+0.9
1,919,789	-				-2.4
1,919,789	-				+1.0
1,919,789	-				-0.7
1,919,789	-				-0.9
1,919,789	-				-0.2
1,919,789	-				-1.7
1,919,789	-				+0.3
1,919,789	-				+4.4
1,920,026	-		PFLU_RS08620	0.47	-2.3
1,920,047	+		PFLU_RS08620	0.50	-1.8
1,920,047	+		PFLU_RS08620	0.50	+0.1
1,920,048	-		PFLU_RS08620	0.50	-0.9
1,920,048	-		PFLU_RS08620	0.50	+0.4
1,920,048	-		PFLU_RS08620	0.50	-0.2
1,920,048	-		PFLU_RS08620	0.50	+1.5
1,920,147	+		PFLU_RS08620	0.67	-0.5
1,920,148	-		PFLU_RS08620	0.67	-0.5
1,920,148	-		PFLU_RS08620	0.67	-2.9
1,920,148	-		PFLU_RS08620	0.67	-1.0
1,920,221	+		PFLU_RS08620	0.79	+1.3
1,920,221	+		PFLU_RS08620	0.79	-0.5
1,920,222	-		PFLU_RS08620	0.79	-1.3
1,920,222	-		PFLU_RS08620	0.79	+2.1
1,920,222	-		PFLU_RS08620	0.79	-2.0
1,920,222	-		PFLU_RS08620	0.79	+1.3
1,920,222	-		PFLU_RS08620	0.79	-2.5
1,920,384	+				-1.5
1,920,384	+				-1.8
1,920,384	+				+0.8
1,920,384	+				+1.1
1,920,384	+				-0.7
1,920,384	+				+0.5
1,920,384	+				-1.1
1,920,385	-				-2.4
1,920,385	-				-0.5
1,920,385	-				-0.5
1,920,385	-				+3.1
1,920,385	-				-1.5
1,920,385	-				-0.7
1,920,385	-				+4.1
1,920,385	-				-2.5
1,920,386	+				-0.9
1,920,386	+				-1.7
1,920,386	+				+3.0
1,920,386	+				+2.1
1,920,386	+				-0.9
1,920,386	+				-1.5
1,920,386	+				-0.4
1,920,386	+				-0.7
1,920,386	+				-0.9
1,920,386	+				-0.5
1,920,386	+				+0.5
1,920,386	+				-2.2
1,920,386	+				+0.4
1,920,386	+				+0.2
1,920,386	+				+2.6
1,920,387	-				-1.7
1,920,387	-				+3.1
1,920,387	-				+0.3
1,920,387	-				+0.4
1,920,387	-				-2.8
1,920,387	-				+2.4
1,920,387	-				-0.9
1,920,387	-				+1.7
1,920,387	-				+0.5
1,920,387	-				-1.7
1,920,387	-				-1.3
1,920,469	+				-1.5
1,920,469	+				-1.6
1,920,470	-				-1.5
1,920,470	-				-1.3
1,920,506	+		PFLU_RS08625	0.15	-0.5
1,920,507	-		PFLU_RS08625	0.16	-1.2
1,920,588	+		PFLU_RS08625	0.31	-1.3
1,920,588	+		PFLU_RS08625	0.31	+0.5
1,920,588	+		PFLU_RS08625	0.31	+3.1
1,920,588	+		PFLU_RS08625	0.31	-1.6
1,920,588	+		PFLU_RS08625	0.31	-2.7
1,920,589	-		PFLU_RS08625	0.31	-0.9
1,920,589	-		PFLU_RS08625	0.31	-1.2
1,920,589	-		PFLU_RS08625	0.31	-1.8
1,920,589	-		PFLU_RS08625	0.31	-2.7
1,920,589	-		PFLU_RS08625	0.31	-1.7
1,920,589	-		PFLU_RS08625	0.31	+0.5
1,920,589	-		PFLU_RS08625	0.31	+0.1
1,920,993	-				-0.7
1,921,053	+				-0.1
1,921,053	+				-1.5
1,921,054	-				-0.2
1,921,054	-				+0.3
1,921,054	-				-0.7
1,921,054	-				+2.0
1,921,054	-				-0.2
1,921,054	-				-0.6
1,921,054	-				-2.8
1,921,054	-				-2.8
1,921,054	-				-0.7
1,921,054	-				+0.5