Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19565

Experiment: chicken 3; day 3; diet=StandardDiet; sample=FecalPellet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	chicken 3; day 3; diet=StandardDiet; sample=FecalPellet
2,173,652	-				-1.2
2,173,656	-				+0.5
2,173,656	-				-0.7
2,173,656	-				-0.3
2,173,667	-				+1.0
2,173,691	+				-0.6
2,173,691	+				+0.9
2,173,691	+				+0.2
2,173,691	+				+1.3
2,173,691	+				+1.1
2,173,691	+				+0.8
2,173,692	+				-0.4
2,173,697	-				+0.7
2,173,698	-				+0.2
2,173,699	-				+0.9
2,173,699	-				+1.7
2,173,712	-				-2.0
2,173,753	+				+1.5
2,173,760	+				+2.2
2,173,780	+				-0.3
2,173,823	+				+0.0
2,173,831	-				+1.0
2,173,831	-				+0.2
2,173,831	-				+0.8
2,173,834	-				+0.1
2,173,837	+				-2.3
2,173,838	+				-1.9
2,173,848	-				+0.5
2,173,870	+				+0.9
2,173,871	+				-0.1
2,173,871	+				-1.1
2,173,871	+				+0.4
2,173,871	+				-1.6
2,173,879	-				-0.2
2,173,879	-				+0.1
2,173,879	-				+0.7
2,173,903	+				+1.2
2,173,916	+				-0.3
2,173,916	-				-0.7
2,173,921	+				+2.9
2,173,929	+		BBR_RS19565	0.11	+0.4
2,173,929	+		BBR_RS19565	0.11	-2.1
2,173,937	-		BBR_RS19565	0.12	-2.2
2,173,942	+		BBR_RS19565	0.12	+0.5
2,173,942	+		BBR_RS19565	0.12	+0.1
2,173,950	-		BBR_RS19565	0.14	-0.8
2,173,950	-		BBR_RS19565	0.14	+1.4
2,173,950	-		BBR_RS19565	0.14	+0.5
2,173,968	+		BBR_RS19565	0.16	+1.3
2,173,977	-		BBR_RS19565	0.17	+0.9
2,173,986	+		BBR_RS19565	0.19	-1.5
2,174,027	+		BBR_RS19565	0.24	+0.9
2,174,042	-		BBR_RS19565	0.27	-0.6
2,174,084	+		BBR_RS19565	0.32	+1.7
2,174,084	+		BBR_RS19565	0.32	+0.3
2,174,114	+		BBR_RS19565	0.37	+0.4
2,174,124	+		BBR_RS19565	0.38	+0.7
2,174,126	+		BBR_RS19565	0.38	+0.2
2,174,151	-		BBR_RS19565	0.42	+1.1
2,174,153	-		BBR_RS19565	0.42	+1.1
2,174,153	-		BBR_RS19565	0.42	+1.8
2,174,154	+		BBR_RS19565	0.42	+0.7
2,174,158	-		BBR_RS19565	0.43	-1.9
2,174,158	-		BBR_RS19565	0.43	+1.1
2,174,165	-		BBR_RS19565	0.44	-0.3
2,174,170	-		BBR_RS19565	0.45	+1.5
2,174,175	+		BBR_RS19565	0.45	-0.4
2,174,179	+		BBR_RS19565	0.46	+1.3
2,174,179	+		BBR_RS19565	0.46	-1.2
2,174,179	+		BBR_RS19565	0.46	+1.0
2,174,187	-		BBR_RS19565	0.47	+0.6
2,174,189	-		BBR_RS19565	0.47	+0.6
2,174,199	+		BBR_RS19565	0.49	-1.4
2,174,244	+		BBR_RS19565	0.55	-1.4
2,174,284	+		BBR_RS19565	0.61	-0.2
2,174,284	+		BBR_RS19565	0.61	-0.0
2,174,292	-		BBR_RS19565	0.62	-2.2
2,174,292	-		BBR_RS19565	0.62	+1.9
2,174,292	-		BBR_RS19565	0.62	-0.0
2,174,297	-		BBR_RS19565	0.63	-0.1
2,174,322	-		BBR_RS19565	0.66	+0.9
2,174,327	-		BBR_RS19565	0.67	-0.5
2,174,347	-		BBR_RS19565	0.70	-0.3
2,174,393	+		BBR_RS19565	0.76	-0.2
2,174,402	+		BBR_RS19565	0.77	+0.5
2,174,402	+		BBR_RS19565	0.77	-1.2
2,174,410	+		BBR_RS19565	0.79	-1.0
2,174,410	-		BBR_RS19565	0.79	+1.7
2,174,410	-		BBR_RS19565	0.79	-2.9
2,174,412	+		BBR_RS19565	0.79	+2.5
2,174,420	-		BBR_RS19565	0.80	+0.4
2,174,420	-		BBR_RS19565	0.80	+0.2
2,174,420	-		BBR_RS19565	0.80	+0.1
2,174,420	-		BBR_RS19565	0.80	+0.1
2,174,420	-		BBR_RS19565	0.80	+0.3
2,174,446	+		BBR_RS19565	0.84	-0.2
2,174,446	+		BBR_RS19565	0.84	+1.4
2,174,468	+		BBR_RS19565	0.87	-0.2
2,174,483	-		BBR_RS19565	0.89	+0.5
2,174,498	+				-0.9
2,174,498	+				+0.7
2,174,498	+				+0.4
2,174,500	+				-1.6
2,174,506	-				-0.9
2,174,506	-				+1.9
2,174,506	-				+0.0
2,174,526	+				-0.1
2,174,532	-				+1.7
2,174,541	-				+1.6
2,174,546	-				-1.2
2,174,546	-				+1.3
2,174,560	+				+0.1
2,174,565	+				-0.0
2,174,568	-				-0.1
2,174,573	-				+0.2
2,174,573	-				-0.5
2,174,582	+				+2.9
2,174,595	-				+0.4
2,174,619	+				-0.6
2,174,627	-				-0.6
2,174,629	+				+0.5
2,174,629	+				+0.7
2,174,635	-				-0.5
2,174,639	+				-0.0
2,174,644	+				+0.7
2,174,646	+				-1.2
2,174,647	-				-1.0
2,174,647	-				-0.4
2,174,664	+				+0.9
2,174,672	-				+1.4
2,174,674	+				-1.3
2,174,684	+				-1.2
2,174,686	+				-0.0
2,174,686	+				+0.0
2,174,692	-				+2.1
2,174,692	-				+0.5
2,174,694	-				+0.7
2,174,696	+		BBR_RS19570	0.10	-0.3
2,174,699	-		BBR_RS19570	0.10	-2.9
2,174,701	+		BBR_RS19570	0.10	+0.3
2,174,701	+		BBR_RS19570	0.10	-2.0
2,174,730	+		BBR_RS19570	0.13	-1.7
2,174,730	+		BBR_RS19570	0.13	+0.4
2,174,731	-		BBR_RS19570	0.13	-1.0
2,174,731	-		BBR_RS19570	0.13	-1.9
2,174,735	+		BBR_RS19570	0.13	-0.4
2,174,735	+		BBR_RS19570	0.13	+1.2
2,174,735	+		BBR_RS19570	0.13	+0.9
2,174,735	+		BBR_RS19570	0.13	+1.9
2,174,735	+		BBR_RS19570	0.13	-2.2
2,174,735	+		BBR_RS19570	0.13	+0.6
2,174,738	-		BBR_RS19570	0.13	-0.8
2,174,743	-		BBR_RS19570	0.14	-0.2
2,174,743	-		BBR_RS19570	0.14	-0.1
2,174,743	-		BBR_RS19570	0.14	-0.1
2,174,743	-		BBR_RS19570	0.14	-0.4
2,174,743	-		BBR_RS19570	0.14	-1.2
2,174,753	+		BBR_RS19570	0.15	+0.5
2,174,753	+		BBR_RS19570	0.15	+1.3
2,174,762	+		BBR_RS19570	0.15	-0.4
2,174,762	+		BBR_RS19570	0.15	-2.3
2,174,762	+		BBR_RS19570	0.15	+0.1
2,174,767	+		BBR_RS19570	0.16	-1.9
2,174,775	-		BBR_RS19570	0.16	+0.6
2,174,776	+		BBR_RS19570	0.16	-1.1
2,174,778	-		BBR_RS19570	0.17	+1.4
2,174,786	+		BBR_RS19570	0.17	+1.7
2,174,820	+		BBR_RS19570	0.20	-1.9
2,174,827	+		BBR_RS19570	0.20	-1.1
2,174,902	+		BBR_RS19570	0.26	+1.4
2,174,918	-		BBR_RS19570	0.28	-0.1
2,174,920	-		BBR_RS19570	0.28	+1.1
2,174,923	+		BBR_RS19570	0.28	-1.6
2,174,962	-		BBR_RS19570	0.31	+1.8
2,174,965	-		BBR_RS19570	0.31	-0.9
2,174,970	-		BBR_RS19570	0.32	+0.5
2,174,984	+		BBR_RS19570	0.33	+0.4
2,174,989	+		BBR_RS19570	0.33	-1.0
2,174,989	+		BBR_RS19570	0.33	-0.2
2,174,997	-		BBR_RS19570	0.34	+0.7
2,174,997	-		BBR_RS19570	0.34	+0.2
2,175,005	-		BBR_RS19570	0.35	-0.2
2,175,007	+		BBR_RS19570	0.35	+0.8
2,175,013	+		BBR_RS19570	0.35	+0.8
2,175,015	-		BBR_RS19570	0.35	+0.6
2,175,028	+		BBR_RS19570	0.36	+0.6
2,175,034	+		BBR_RS19570	0.37	-0.4
2,175,051	-		BBR_RS19570	0.38	-0.3
2,175,051	-		BBR_RS19570	0.38	+0.1
2,175,059	-		BBR_RS19570	0.39	+0.6
2,175,059	-		BBR_RS19570	0.39	+1.7
2,175,077	+		BBR_RS19570	0.40	-1.1
2,175,077	+		BBR_RS19570	0.40	+0.9
2,175,080	+		BBR_RS19570	0.41	-0.0
2,175,085	-		BBR_RS19570	0.41	+0.1
2,175,087	-		BBR_RS19570	0.41	+0.9
2,175,130	-		BBR_RS19570	0.45	-0.4
2,175,130	-		BBR_RS19570	0.45	+0.9
2,175,130	-		BBR_RS19570	0.45	+1.4
2,175,155	+		BBR_RS19570	0.47	+0.6
2,175,155	+		BBR_RS19570	0.47	+1.0
2,175,171	+		BBR_RS19570	0.48	-0.3
2,175,173	+		BBR_RS19570	0.48	-0.3
2,175,173	+		BBR_RS19570	0.48	+1.4
2,175,194	+		BBR_RS19570	0.50	+1.5
2,175,202	-		BBR_RS19570	0.50	-1.2
2,175,202	-		BBR_RS19570	0.50	-0.2
2,175,212	-		BBR_RS19570	0.51	+0.1
2,175,217	+		BBR_RS19570	0.51	+1.1
2,175,217	+		BBR_RS19570	0.51	+0.5
2,175,217	+		BBR_RS19570	0.51	-2.6
2,175,225	-		BBR_RS19570	0.52	+2.2
2,175,225	-		BBR_RS19570	0.52	-0.7
2,175,225	-		BBR_RS19570	0.52	+0.2
2,175,242	+		BBR_RS19570	0.53	-0.6
2,175,242	+		BBR_RS19570	0.53	-0.4
2,175,260	-		BBR_RS19570	0.55	+0.9
2,175,260	-		BBR_RS19570	0.55	-0.9
2,175,277	+		BBR_RS19570	0.56	+0.5
2,175,277	+		BBR_RS19570	0.56	-0.2
2,175,277	+		BBR_RS19570	0.56	-2.3
2,175,285	-		BBR_RS19570	0.57	+1.0
2,175,285	-		BBR_RS19570	0.57	+1.1
2,175,285	-		BBR_RS19570	0.57	-1.2
2,175,287	+		BBR_RS19570	0.57	+0.2
2,175,295	-		BBR_RS19570	0.58	+1.5
2,175,295	-		BBR_RS19570	0.58	+0.8
2,175,295	-		BBR_RS19570	0.58	+0.5
2,175,328	+		BBR_RS19570	0.60	+1.1
2,175,345	-		BBR_RS19570	0.62	+0.1
2,175,345	-		BBR_RS19570	0.62	+1.7
2,175,347	+		BBR_RS19570	0.62	+1.7
2,175,347	+		BBR_RS19570	0.62	+0.5
2,175,360	+		BBR_RS19570	0.63	+1.0
2,175,368	+		BBR_RS19570	0.63	+1.2
2,175,368	+		BBR_RS19570	0.63	-0.0
2,175,368	+		BBR_RS19570	0.63	+0.1
2,175,368	-		BBR_RS19570	0.63	-0.3
2,175,376	-		BBR_RS19570	0.64	+1.1
2,175,376	-		BBR_RS19570	0.64	-0.1
2,175,376	-		BBR_RS19570	0.64	+1.0
2,175,376	-		BBR_RS19570	0.64	+0.7
2,175,376	-		BBR_RS19570	0.64	+0.0
2,175,376	-		BBR_RS19570	0.64	+0.2
2,175,381	+		BBR_RS19570	0.65	+2.1
2,175,415	-		BBR_RS19570	0.67	-1.0
2,175,428	+		BBR_RS19570	0.68	+0.8
2,175,431	-		BBR_RS19570	0.68	-0.6
2,175,436	-		BBR_RS19570	0.69	-0.4
2,175,446	-		BBR_RS19570	0.70	-1.5
2,175,452	+		BBR_RS19570	0.70	+0.4
2,175,462	-		BBR_RS19570	0.71	-0.9
2,175,467	+		BBR_RS19570	0.71	-0.6
2,175,467	+		BBR_RS19570	0.71	+0.1
2,175,484	+		BBR_RS19570	0.73	+0.8
2,175,492	-		BBR_RS19570	0.73	-0.3
2,175,497	+		BBR_RS19570	0.74	+0.1
2,175,497	+		BBR_RS19570	0.74	-0.9
2,175,505	+		BBR_RS19570	0.74	-0.1
2,175,505	+		BBR_RS19570	0.74	+0.7
2,175,505	+		BBR_RS19570	0.74	+1.2
2,175,505	-		BBR_RS19570	0.74	+1.4
2,175,507	+		BBR_RS19570	0.75	+0.3
2,175,513	-		BBR_RS19570	0.75	-0.5
2,175,513	-		BBR_RS19570	0.75	+0.7
2,175,520	-		BBR_RS19570	0.76	-0.7
2,175,520	-		BBR_RS19570	0.76	-1.8
2,175,539	-		BBR_RS19570	0.77	+2.1
2,175,545	-		BBR_RS19570	0.78	+1.1
2,175,554	+		BBR_RS19570	0.78	-0.9