Experiment: chicken 3; day 3; diet=StandardDiet; sample=FecalPellet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11230 and BBR_RS11235 are separated by 437 nucleotides BBR_RS11235 and BBR_RS11240 are separated by 244 nucleotides
BBR_RS11230: BBR_RS11230 - formate--tetrahydrofolate ligase, at 265,106 to 266,623
_RS11230
BBR_RS11235: BBR_RS11235 - hypothetical protein, at 267,061 to 267,408
_RS11235
BBR_RS11240: BBR_RS11240 - GtrA family protein, at 267,653 to 268,189
_RS11240
Position (kb) 267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 266.608 kb on + strand at 266.608 kb on + strand at 266.608 kb on + strand at 266.608 kb on + strand at 266.608 kb on + strand at 266.608 kb on + strand at 266.608 kb on + strand at 266.616 kb on - strand at 266.627 kb on + strand at 266.628 kb on + strand at 266.628 kb on + strand at 266.686 kb on - strand at 266.778 kb on + strand at 266.778 kb on + strand at 266.787 kb on + strand at 266.787 kb on + strand at 266.871 kb on - strand at 266.879 kb on + strand at 266.880 kb on + strand at 266.888 kb on - strand at 266.900 kb on + strand at 266.913 kb on + strand at 266.976 kb on + strand at 267.003 kb on + strand at 267.007 kb on + strand at 267.007 kb on + strand at 267.007 kb on + strand at 267.013 kb on + strand at 267.013 kb on + strand at 267.013 kb on + strand at 267.015 kb on - strand at 267.015 kb on - strand at 267.021 kb on + strand at 267.021 kb on - strand at 267.021 kb on - strand at 267.040 kb on - strand at 267.040 kb on - strand at 267.043 kb on - strand at 267.050 kb on + strand at 267.051 kb on + strand at 267.075 kb on + strand at 267.076 kb on + strand at 267.076 kb on + strand at 267.116 kb on + strand, within BBR_RS11235 at 267.153 kb on - strand, within BBR_RS11235 at 267.163 kb on - strand, within BBR_RS11235 at 267.178 kb on + strand, within BBR_RS11235 at 267.190 kb on + strand, within BBR_RS11235 at 267.212 kb on + strand, within BBR_RS11235 at 267.220 kb on - strand, within BBR_RS11235 at 267.221 kb on - strand, within BBR_RS11235 at 267.238 kb on - strand, within BBR_RS11235 at 267.238 kb on - strand, within BBR_RS11235 at 267.241 kb on - strand, within BBR_RS11235 at 267.299 kb on + strand, within BBR_RS11235 at 267.299 kb on + strand, within BBR_RS11235 at 267.305 kb on + strand, within BBR_RS11235 at 267.307 kb on - strand, within BBR_RS11235 at 267.308 kb on - strand, within BBR_RS11235 at 267.315 kb on + strand, within BBR_RS11235 at 267.318 kb on - strand, within BBR_RS11235 at 267.324 kb on + strand, within BBR_RS11235 at 267.329 kb on + strand, within BBR_RS11235 at 267.329 kb on + strand, within BBR_RS11235 at 267.334 kb on + strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.342 kb on - strand, within BBR_RS11235 at 267.353 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.363 kb on + strand, within BBR_RS11235 at 267.368 kb on + strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.371 kb on - strand, within BBR_RS11235 at 267.376 kb on - strand at 267.376 kb on - strand at 267.382 kb on + strand at 267.390 kb on - strand at 267.391 kb on + strand at 267.412 kb on - strand at 267.455 kb on + strand at 267.458 kb on + strand at 267.464 kb on - strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.468 kb on + strand at 267.476 kb on - strand at 267.508 kb on + strand at 267.508 kb on + strand at 267.515 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.516 kb on - strand at 267.518 kb on + strand at 267.537 kb on - strand at 267.540 kb on - strand at 267.545 kb on - strand at 267.568 kb on + strand at 267.590 kb on - strand at 267.590 kb on - strand at 267.595 kb on + strand at 267.602 kb on - strand at 267.602 kb on - strand at 267.605 kb on + strand at 268.067 kb on + strand, within BBR_RS11240 at 268.067 kb on + strand, within BBR_RS11240 at 268.095 kb on + strand, within BBR_RS11240 at 268.098 kb on + strand, within BBR_RS11240 at 268.155 kb on + strand at 268.155 kb on + strand at 268.160 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.168 kb on + strand at 268.175 kb on - strand at 268.176 kb on - strand at 268.176 kb on - strand at 268.214 kb on + strand at 268.239 kb on + strand at 268.247 kb on - strand at 268.300 kb on + strand at 268.363 kb on + strand at 268.371 kb on - strand at 268.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction chicken 3; day 3; diet=StandardDiet; sample=FecalPellet remove 266,608 + -2.9 266,608 + -4.4 266,608 + -4.0 266,608 + -3.4 266,608 + -2.7 266,608 + -3.1 266,608 + -2.2 266,616 - -2.4 266,627 + -0.5 266,628 + -0.9 266,628 + +0.9 266,686 - -0.9 266,778 + +1.4 266,778 + -0.2 266,787 + +0.4 266,787 + +0.9 266,871 - +0.4 266,879 + +0.1 266,880 + +0.4 266,888 - +0.4 266,900 + -0.1 266,913 + -2.7 266,976 + -0.1 267,003 + -1.0 267,007 + +0.1 267,007 + -1.5 267,007 + +0.1 267,013 + -0.6 267,013 + -0.4 267,013 + +0.0 267,015 - -1.5 267,015 - +0.6 267,021 + -3.6 267,021 - +1.4 267,021 - -1.1 267,040 - +0.9 267,040 - -0.2 267,043 - +0.3 267,050 + -2.0 267,051 + +1.4 267,075 + +0.4 267,076 + +1.4 267,076 + +2.7 267,116 + BBR_RS11235 0.16 +0.9 267,153 - BBR_RS11235 0.26 +0.5 267,163 - BBR_RS11235 0.29 -0.8 267,178 + BBR_RS11235 0.34 +1.0 267,190 + BBR_RS11235 0.37 -1.2 267,212 + BBR_RS11235 0.43 +1.1 267,220 - BBR_RS11235 0.46 +1.3 267,221 - BBR_RS11235 0.46 +0.8 267,238 - BBR_RS11235 0.51 -0.5 267,238 - BBR_RS11235 0.51 +1.5 267,241 - BBR_RS11235 0.52 -1.3 267,299 + BBR_RS11235 0.68 +0.5 267,299 + BBR_RS11235 0.68 +0.2 267,305 + BBR_RS11235 0.70 -2.5 267,307 - BBR_RS11235 0.71 -1.3 267,308 - BBR_RS11235 0.71 +0.6 267,315 + BBR_RS11235 0.73 +2.6 267,318 - BBR_RS11235 0.74 +2.6 267,324 + BBR_RS11235 0.76 -1.7 267,329 + BBR_RS11235 0.77 -1.3 267,329 + BBR_RS11235 0.77 -1.0 267,334 + BBR_RS11235 0.78 -0.3 267,342 - BBR_RS11235 0.81 +1.2 267,342 - BBR_RS11235 0.81 +1.1 267,342 - BBR_RS11235 0.81 -0.2 267,353 + BBR_RS11235 0.84 -0.3 267,363 + BBR_RS11235 0.87 +0.2 267,363 + BBR_RS11235 0.87 +0.8 267,363 + BBR_RS11235 0.87 -0.8 267,363 + BBR_RS11235 0.87 +1.0 267,363 + BBR_RS11235 0.87 -0.8 267,363 + BBR_RS11235 0.87 -1.6 267,368 + BBR_RS11235 0.88 +0.8 267,371 - BBR_RS11235 0.89 +0.5 267,371 - BBR_RS11235 0.89 -0.4 267,371 - BBR_RS11235 0.89 +0.5 267,371 - BBR_RS11235 0.89 -0.5 267,371 - BBR_RS11235 0.89 -0.5 267,371 - BBR_RS11235 0.89 -0.7 267,376 - -2.5 267,376 - +1.4 267,382 + +0.4 267,390 - +0.4 267,391 + -1.7 267,412 - -0.4 267,455 + +1.0 267,458 + -0.5 267,464 - -1.1 267,468 + +0.1 267,468 + -1.1 267,468 + +0.5 267,468 + -1.2 267,468 + +0.4 267,468 + +1.8 267,468 + -2.2 267,476 - +1.1 267,508 + +1.8 267,508 + -0.1 267,515 - -2.1 267,516 - -1.3 267,516 - +0.2 267,516 - +0.1 267,516 - -2.1 267,518 + +1.4 267,537 - +1.1 267,540 - +1.1 267,545 - +1.0 267,568 + +0.4 267,590 - -1.7 267,590 - +0.3 267,595 + +0.6 267,602 - -1.1 267,602 - +1.6 267,605 + -3.8 268,067 + BBR_RS11240 0.77 -3.1 268,067 + BBR_RS11240 0.77 -2.7 268,095 + BBR_RS11240 0.82 -3.1 268,098 + BBR_RS11240 0.83 -0.0 268,155 + -3.8 268,155 + -2.4 268,160 + +0.1 268,168 + -3.6 268,168 + -4.1 268,168 + -4.0 268,175 - -3.6 268,176 - -1.3 268,176 - -1.0 268,214 + -0.9 268,239 + +0.3 268,247 - -0.4 268,300 + -0.5 268,363 + -2.7 268,371 - -0.0 268,371 - -0.2
Or see this region's nucleotide sequence