Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16920

Experiment: chicken 3; day 2; diet=StandardDiet; sample=FecalPellet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS16915 and BBR_RS16920 are separated by 16 nucleotidesBBR_RS16920 and BBR_RS16925 overlap by 14 nucleotides BBR_RS16915: BBR_RS16915 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,566,631 to 1,567,803 _RS16915 BBR_RS16920: BBR_RS16920 - putative lipid II flippase FtsW, at 1,567,820 to 1,569,037 _RS16920 BBR_RS16925: BBR_RS16925 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 1,569,024 to 1,570,469 _RS16925 Position (kb) 1567 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2at 1567.817 kb on + strandat 1567.821 kb on - strandat 1567.825 kb on - strandat 1567.828 kb on - strandat 1567.867 kb on - strandat 1567.877 kb on - strandat 1568.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction chicken 3; day 2; diet=StandardDiet; sample=FecalPellet
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1,567,817 + -0.7
1,567,821 - +1.4
1,567,825 - -2.2
1,567,828 - +0.7
1,567,867 - +1.9
1,567,877 - -2.2
1,568,978 - -2.4

Or see this region's nucleotide sequence