Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15110

Experiment: chicken 3; day 2; diet=StandardDiet; sample=FecalPellet

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS15105 and BBR_RS15110 are separated by 5 nucleotidesBBR_RS15110 and BBR_RS15115 are separated by 26 nucleotidesBBR_RS15115 and BBR_RS15120 are separated by 168 nucleotides BBR_RS15105: BBR_RS15105 - Fe-S cluster assembly protein SufB, at 1,158,514 to 1,160,013 _RS15105 BBR_RS15110: BBR_RS15110 - Fe-S cluster assembly protein SufD, at 1,160,019 to 1,161,254 _RS15110 BBR_RS15115: BBR_RS15115 - Fe-S cluster assembly ATPase SufC, at 1,161,281 to 1,162,060 _RS15115 BBR_RS15120: BBR_RS15120 - aminotransferase class V-fold PLP-dependent enzyme, at 1,162,229 to 1,163,503 _RS15120 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -3 -2 -1 0 1at 1161.177 kb on + strandat 1161.203 kb on + strandat 1161.236 kb on + strandat 1161.250 kb on + strandat 1161.250 kb on + strandat 1162.008 kb on + strandat 1162.008 kb on + strandat 1162.008 kb on + strandat 1162.090 kb on + strandat 1162.092 kb on + strandat 1162.125 kb on - strandat 1162.213 kb on + strandat 1162.213 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction chicken 3; day 2; diet=StandardDiet; sample=FecalPellet
remove
1,161,177 + -2.9
1,161,203 + -0.3
1,161,236 + +1.1
1,161,250 + -2.0
1,161,250 + -1.2
1,162,008 + -0.6
1,162,008 + -0.3
1,162,008 + +0.0
1,162,090 + -0.6
1,162,092 + +0.3
1,162,125 - -0.3
1,162,213 + -0.2
1,162,213 + -0.8

Or see this region's nucleotide sequence