Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03130

Experiment: H2 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03120 and MMP_RS03125 overlap by 4 nucleotidesMMP_RS03125 and MMP_RS03130 are separated by 76 nucleotidesMMP_RS03130 and MMP_RS03135 are separated by 18 nucleotides MMP_RS03120: MMP_RS03120 - hypothetical protein, at 588,738 to 588,920 _RS03120 MMP_RS03125: MMP_RS03125 - cell division ATPase MinD, at 588,917 to 589,702 _RS03125 MMP_RS03130: MMP_RS03130 - hypothetical protein, at 589,779 to 590,345 _RS03130 MMP_RS03135: MMP_RS03135 - O-phosphoseryl-tRNA(Sec) selenium transferase, at 590,364 to 591,674 _RS03135 Position (kb) 589 590 591Strain fitness (log2 ratio) -1 0 1at 588.880 kb on + strand, within MMP_RS03120at 588.880 kb on + strand, within MMP_RS03120at 588.888 kb on - strand, within MMP_RS03120at 588.891 kb on - strand, within MMP_RS03120at 588.938 kb on - strandat 588.993 kb on - strandat 589.069 kb on - strand, within MMP_RS03125at 589.129 kb on - strand, within MMP_RS03125at 589.284 kb on + strand, within MMP_RS03125at 589.295 kb on - strand, within MMP_RS03125at 589.322 kb on + strand, within MMP_RS03125at 589.596 kb on + strand, within MMP_RS03125at 589.683 kb on + strandat 589.736 kb on - strandat 589.737 kb on + strandat 589.737 kb on + strandat 589.738 kb on - strandat 589.738 kb on - strandat 589.738 kb on - strandat 589.739 kb on + strandat 589.739 kb on + strandat 589.739 kb on + strandat 589.739 kb on + strandat 589.739 kb on + strandat 589.740 kb on - strandat 589.741 kb on + strandat 589.746 kb on + strandat 589.754 kb on + strandat 589.764 kb on - strandat 589.767 kb on - strandat 589.767 kb on - strandat 589.767 kb on - strandat 589.767 kb on - strandat 589.768 kb on + strandat 589.769 kb on - strandat 589.769 kb on - strandat 589.780 kb on - strandat 589.827 kb on + strandat 589.827 kb on + strandat 589.887 kb on + strand, within MMP_RS03130at 589.889 kb on - strand, within MMP_RS03130at 589.897 kb on + strand, within MMP_RS03130at 590.016 kb on + strand, within MMP_RS03130at 590.031 kb on - strand, within MMP_RS03130at 590.055 kb on - strand, within MMP_RS03130at 590.060 kb on - strand, within MMP_RS03130at 590.100 kb on + strand, within MMP_RS03130at 590.100 kb on + strand, within MMP_RS03130at 590.103 kb on + strand, within MMP_RS03130at 590.267 kb on - strand, within MMP_RS03130at 590.277 kb on - strand, within MMP_RS03130at 590.323 kb on - strandat 590.387 kb on - strandat 590.401 kb on + strandat 590.446 kb on - strandat 590.528 kb on - strandat 590.730 kb on + strandat 590.905 kb on - strandat 590.983 kb on + strandat 591.114 kb on - strandat 591.321 kb on - strandat 591.340 kb on - strandat 591.341 kb on + strandat 591.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 50 mM hypophosphite
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588,880 + MMP_RS03120 0.78 -0.6
588,880 + MMP_RS03120 0.78 -0.5
588,888 - MMP_RS03120 0.82 +0.4
588,891 - MMP_RS03120 0.84 -0.1
588,938 - -0.1
588,993 - +1.6
589,069 - MMP_RS03125 0.19 +1.1
589,129 - MMP_RS03125 0.27 +1.2
589,284 + MMP_RS03125 0.47 +0.9
589,295 - MMP_RS03125 0.48 +0.0
589,322 + MMP_RS03125 0.52 +0.6
589,596 + MMP_RS03125 0.86 -0.0
589,683 + +0.8
589,736 - +0.6
589,737 + +0.3
589,737 + -0.1
589,738 - +0.7
589,738 - +1.1
589,738 - +0.3
589,739 + -0.3
589,739 + +1.7
589,739 + +0.8
589,739 + -0.4
589,739 + +0.8
589,740 - +0.5
589,741 + +0.9
589,746 + -0.0
589,754 + -0.7
589,764 - +0.8
589,767 - -0.3
589,767 - -1.4
589,767 - +0.6
589,767 - +0.9
589,768 + +0.3
589,769 - -0.1
589,769 - +0.4
589,780 - -0.2
589,827 + -0.7
589,827 + -1.5
589,887 + MMP_RS03130 0.19 -0.5
589,889 - MMP_RS03130 0.19 +0.1
589,897 + MMP_RS03130 0.21 -0.3
590,016 + MMP_RS03130 0.42 -0.6
590,031 - MMP_RS03130 0.44 -0.5
590,055 - MMP_RS03130 0.49 -0.2
590,060 - MMP_RS03130 0.50 -0.7
590,100 + MMP_RS03130 0.57 -0.2
590,100 + MMP_RS03130 0.57 -0.6
590,103 + MMP_RS03130 0.57 -1.0
590,267 - MMP_RS03130 0.86 +0.1
590,277 - MMP_RS03130 0.88 -0.3
590,323 - -0.7
590,387 - -0.5
590,401 + -1.3
590,446 - -0.5
590,528 - -0.2
590,730 + +0.4
590,905 - +0.3
590,983 + +1.0
591,114 - -0.2
591,321 - -0.3
591,340 - -0.1
591,341 + +1.0
591,341 + +0.8

Or see this region's nucleotide sequence