Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05015

Experiment: H2 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05005 and MMP_RS05010 are separated by 256 nucleotidesMMP_RS05010 and MMP_RS05015 are separated by 18 nucleotidesMMP_RS05015 and MMP_RS05020 are separated by 33 nucleotidesMMP_RS05020 and MMP_RS05025 are separated by 28 nucleotides MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893 _RS05005 MMP_RS05010: MMP_RS05010 - KEOPS complex subunit Cgi121, at 954,150 to 954,581 _RS05010 MMP_RS05015: MMP_RS05015 - histidinol dehydrogenase, at 954,600 to 955,874 _RS05015 MMP_RS05020: MMP_RS05020 - hypothetical protein, at 955,908 to 956,324 _RS05020 MMP_RS05025: MMP_RS05025 - ATP-dependent DNA ligase, at 956,353 to 958,074 _RS05025 Position (kb) 954 955 956Strain fitness (log2 ratio) -1 0 1 2 3 4at 953.924 kb on - strandat 953.925 kb on + strandat 953.925 kb on + strandat 953.934 kb on - strandat 953.934 kb on - strandat 953.935 kb on + strandat 953.963 kb on + strandat 953.967 kb on + strandat 953.968 kb on - strandat 953.969 kb on + strandat 953.988 kb on - strandat 953.988 kb on - strandat 953.989 kb on + strandat 954.022 kb on + strandat 954.046 kb on + strandat 954.049 kb on - strandat 954.050 kb on + strandat 954.050 kb on + strandat 954.052 kb on + strandat 954.061 kb on - strandat 954.069 kb on - strandat 954.069 kb on - strandat 954.071 kb on - strandat 954.074 kb on - strandat 954.080 kb on + strandat 954.138 kb on + strandat 954.157 kb on - strandat 954.268 kb on - strandat 954.269 kb on + strandat 954.271 kb on + strandat 954.294 kb on + strandat 954.322 kb on - strandat 954.650 kb on + strandat 954.791 kb on + strandat 954.839 kb on + strandat 954.979 kb on + strandat 955.060 kb on - strandat 955.394 kb on - strandat 955.394 kb on - strandat 955.401 kb on + strandat 955.554 kb on - strandat 955.927 kb on - strandat 955.932 kb on + strandat 956.053 kb on - strand, within MMP_RS05020at 956.131 kb on - strand, within MMP_RS05020at 956.174 kb on + strand, within MMP_RS05020at 956.281 kb on - strand, within MMP_RS05020at 956.281 kb on - strand, within MMP_RS05020at 956.299 kb on - strandat 956.661 kb on - strandat 956.695 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 50 mM hypophosphite
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953,924 - +1.2
953,925 + +2.4
953,925 + +2.1
953,934 - +1.1
953,934 - +1.4
953,935 + +0.5
953,963 + +1.6
953,967 + +0.4
953,968 - -0.6
953,969 + +0.4
953,988 - +0.5
953,988 - -0.1
953,989 + -0.9
954,022 + -0.9
954,046 + -1.2
954,049 - +1.4
954,050 + +0.3
954,050 + +0.0
954,052 + +2.2
954,061 - +0.4
954,069 - +0.8
954,069 - +0.4
954,071 - +0.9
954,074 - -0.5
954,080 + -0.1
954,138 + +0.4
954,157 - +0.9
954,268 - +0.4
954,269 + +1.2
954,271 + +0.5
954,294 + -0.0
954,322 - +2.2
954,650 + +1.3
954,791 + +1.0
954,839 + +3.5
954,979 + +1.4
955,060 - +1.5
955,394 - +1.2
955,394 - +4.2
955,401 + +1.4
955,554 - +1.3
955,927 - -0.0
955,932 + -0.2
956,053 - MMP_RS05020 0.35 -0.3
956,131 - MMP_RS05020 0.53 +0.7
956,174 + MMP_RS05020 0.64 +1.0
956,281 - MMP_RS05020 0.89 -1.2
956,281 - MMP_RS05020 0.89 +0.3
956,299 - +0.4
956,661 - +1.7
956,695 + +0.3

Or see this region's nucleotide sequence