Experiment: H2 50 mM hypophosphite
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02460 and MMP_RS02465 are separated by 153 nucleotides MMP_RS02465 and MMP_RS02470 are separated by 365 nucleotides MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides
MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367
_RS02460
MMP_RS02465: MMP_RS02465 - hypothetical protein, at 462,521 to 463,246
_RS02465
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 461.606 kb on + strand, within MMP_RS02460 at 461.643 kb on + strand, within MMP_RS02460 at 461.755 kb on - strand, within MMP_RS02460 at 461.756 kb on + strand, within MMP_RS02460 at 461.756 kb on + strand, within MMP_RS02460 at 461.829 kb on + strand, within MMP_RS02460 at 461.844 kb on - strand, within MMP_RS02460 at 461.857 kb on - strand, within MMP_RS02460 at 461.913 kb on - strand, within MMP_RS02460 at 461.922 kb on + strand, within MMP_RS02460 at 461.947 kb on - strand, within MMP_RS02460 at 461.948 kb on + strand, within MMP_RS02460 at 461.948 kb on + strand, within MMP_RS02460 at 461.949 kb on - strand, within MMP_RS02460 at 461.949 kb on - strand, within MMP_RS02460 at 461.949 kb on - strand, within MMP_RS02460 at 461.949 kb on - strand, within MMP_RS02460 at 461.949 kb on - strand, within MMP_RS02460 at 461.950 kb on + strand, within MMP_RS02460 at 461.950 kb on + strand, within MMP_RS02460 at 461.950 kb on + strand, within MMP_RS02460 at 461.970 kb on - strand, within MMP_RS02460 at 461.972 kb on - strand, within MMP_RS02460 at 461.972 kb on - strand, within MMP_RS02460 at 461.973 kb on + strand, within MMP_RS02460 at 461.973 kb on + strand, within MMP_RS02460 at 461.973 kb on + strand, within MMP_RS02460 at 461.975 kb on - strand, within MMP_RS02460 at 461.975 kb on - strand, within MMP_RS02460 at 462.047 kb on + strand, within MMP_RS02460 at 462.054 kb on - strand, within MMP_RS02460 at 462.054 kb on - strand, within MMP_RS02460 at 462.054 kb on - strand, within MMP_RS02460 at 462.054 kb on - strand, within MMP_RS02460 at 462.055 kb on + strand, within MMP_RS02460 at 462.059 kb on + strand, within MMP_RS02460 at 462.123 kb on - strand at 462.197 kb on - strand at 462.223 kb on - strand at 462.226 kb on - strand at 462.227 kb on + strand at 462.227 kb on + strand at 462.295 kb on - strand at 462.300 kb on + strand at 462.319 kb on + strand at 462.321 kb on + strand at 462.394 kb on + strand at 462.405 kb on - strand at 462.430 kb on - strand at 462.444 kb on - strand at 462.581 kb on + strand at 462.581 kb on + strand at 462.729 kb on - strand, within MMP_RS02465 at 462.802 kb on - strand, within MMP_RS02465 at 462.802 kb on - strand, within MMP_RS02465 at 462.807 kb on + strand, within MMP_RS02465 at 462.875 kb on - strand, within MMP_RS02465 at 462.909 kb on - strand, within MMP_RS02465 at 462.909 kb on - strand, within MMP_RS02465 at 462.914 kb on - strand, within MMP_RS02465 at 462.914 kb on - strand, within MMP_RS02465 at 462.977 kb on + strand, within MMP_RS02465 at 463.029 kb on - strand, within MMP_RS02465 at 463.035 kb on - strand, within MMP_RS02465 at 463.047 kb on + strand, within MMP_RS02465 at 463.067 kb on - strand, within MMP_RS02465 at 463.085 kb on - strand, within MMP_RS02465 at 463.140 kb on - strand, within MMP_RS02465 at 463.145 kb on - strand, within MMP_RS02465 at 463.275 kb on - strand at 463.276 kb on + strand at 463.276 kb on + strand at 463.277 kb on - strand at 463.375 kb on + strand at 463.380 kb on - strand at 463.387 kb on - strand at 463.388 kb on + strand at 463.404 kb on - strand at 463.404 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.476 kb on - strand at 463.481 kb on - strand at 463.499 kb on - strand at 463.509 kb on - strand at 463.510 kb on + strand at 463.517 kb on - strand at 463.517 kb on - strand at 463.527 kb on - strand at 463.531 kb on - strand at 463.532 kb on + strand at 463.532 kb on + strand at 463.547 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.637 kb on + strand at 463.676 kb on + strand, within MMP_RS02470 at 463.819 kb on - strand, within MMP_RS02470 at 464.000 kb on + strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.010 kb on + strand at 464.011 kb on - strand at 464.012 kb on + strand at 464.032 kb on - strand at 464.103 kb on + strand at 464.103 kb on + strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.106 kb on + strand at 464.106 kb on + strand at 464.198 kb on - strand, within MMP_RS02475 at 464.199 kb on + strand, within MMP_RS02475 at 464.236 kb on - strand, within MMP_RS02475
Per-strain Table
Position Strand Gene LocusTag Fraction H2 50 mM hypophosphite remove 461,606 + MMP_RS02460 0.75 +0.8 461,643 + MMP_RS02460 0.76 +2.2 461,755 - MMP_RS02460 0.80 +1.5 461,756 + MMP_RS02460 0.80 +2.2 461,756 + MMP_RS02460 0.80 +0.8 461,829 + MMP_RS02460 0.82 +1.2 461,844 - MMP_RS02460 0.83 +2.1 461,857 - MMP_RS02460 0.83 +2.8 461,913 - MMP_RS02460 0.85 +1.4 461,922 + MMP_RS02460 0.85 -0.0 461,947 - MMP_RS02460 0.86 +0.3 461,948 + MMP_RS02460 0.86 +1.9 461,948 + MMP_RS02460 0.86 +3.4 461,949 - MMP_RS02460 0.86 +1.4 461,949 - MMP_RS02460 0.86 +1.0 461,949 - MMP_RS02460 0.86 +1.3 461,949 - MMP_RS02460 0.86 +2.3 461,949 - MMP_RS02460 0.86 +0.5 461,950 + MMP_RS02460 0.86 +2.2 461,950 + MMP_RS02460 0.86 +1.6 461,950 + MMP_RS02460 0.86 +1.6 461,970 - MMP_RS02460 0.87 +1.9 461,972 - MMP_RS02460 0.87 -0.4 461,972 - MMP_RS02460 0.87 +0.4 461,973 + MMP_RS02460 0.87 +1.6 461,973 + MMP_RS02460 0.87 +3.8 461,973 + MMP_RS02460 0.87 +2.1 461,975 - MMP_RS02460 0.87 -0.3 461,975 - MMP_RS02460 0.87 +2.4 462,047 + MMP_RS02460 0.90 +2.5 462,054 - MMP_RS02460 0.90 +1.8 462,054 - MMP_RS02460 0.90 +1.0 462,054 - MMP_RS02460 0.90 +1.8 462,054 - MMP_RS02460 0.90 +1.6 462,055 + MMP_RS02460 0.90 +2.9 462,059 + MMP_RS02460 0.90 +2.7 462,123 - +1.1 462,197 - +2.8 462,223 - +0.1 462,226 - +1.7 462,227 + +2.2 462,227 + +2.6 462,295 - +0.5 462,300 + +3.3 462,319 + +1.9 462,321 + +0.9 462,394 + +2.3 462,405 - +0.9 462,430 - +1.0 462,444 - +0.3 462,581 + +0.3 462,581 + +1.7 462,729 - MMP_RS02465 0.29 +2.2 462,802 - MMP_RS02465 0.39 +1.8 462,802 - MMP_RS02465 0.39 +0.9 462,807 + MMP_RS02465 0.39 +1.3 462,875 - MMP_RS02465 0.49 -1.3 462,909 - MMP_RS02465 0.53 +2.2 462,909 - MMP_RS02465 0.53 +2.1 462,914 - MMP_RS02465 0.54 +2.0 462,914 - MMP_RS02465 0.54 -1.3 462,977 + MMP_RS02465 0.63 +2.3 463,029 - MMP_RS02465 0.70 +1.5 463,035 - MMP_RS02465 0.71 +1.2 463,047 + MMP_RS02465 0.72 +1.6 463,067 - MMP_RS02465 0.75 +2.2 463,085 - MMP_RS02465 0.78 +3.0 463,140 - MMP_RS02465 0.85 +2.0 463,145 - MMP_RS02465 0.86 -0.1 463,275 - +1.8 463,276 + +2.0 463,276 + +0.5 463,277 - +1.2 463,375 + -1.0 463,380 - -1.1 463,387 - -0.5 463,388 + -0.1 463,404 - -0.5 463,404 - +0.8 463,457 - -1.4 463,457 - -0.7 463,457 - +0.1 463,476 - -3.2 463,481 - +1.0 463,499 - -0.3 463,509 - +0.6 463,510 + -0.2 463,517 - +0.8 463,517 - -1.0 463,527 - +0.9 463,531 - -1.6 463,532 + -0.8 463,532 + +1.2 463,547 - -0.2 463,551 - -0.5 463,551 - -0.8 463,551 - -0.6 463,637 + +1.2 463,676 + MMP_RS02470 0.18 -0.6 463,819 - MMP_RS02470 0.57 +2.1 464,000 + +1.1 464,009 - +2.0 464,009 - +2.3 464,009 - +2.4 464,010 + +1.9 464,011 - +1.9 464,012 + +2.2 464,032 - +0.7 464,103 + +0.6 464,103 + +1.0 464,105 - +0.5 464,105 - +0.4 464,105 - +1.3 464,106 + -0.4 464,106 + -1.0 464,198 - MMP_RS02475 0.27 -2.3 464,199 + MMP_RS02475 0.28 +0.0 464,236 - MMP_RS02475 0.42 +1.8
Or see this region's nucleotide sequence