Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00150

Experiment: H2 50 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00145 and MMP_RS00150 are separated by 179 nucleotidesMMP_RS00150 and MMP_RS00155 are separated by 53 nucleotidesMMP_RS00155 and MMP_RS00160 are separated by 67 nucleotides MMP_RS00145: MMP_RS00145 - ATP-dependent Clp protease proteolytic subunit, at 30,743 to 31,567 _RS00145 MMP_RS00150: MMP_RS00150 - AAA family ATPase, at 31,747 to 32,862 _RS00150 MMP_RS00155: MMP_RS00155 - heavy metal-binding domain-containing protein, at 32,916 to 33,188 _RS00155 MMP_RS00160: MMP_RS00160 - DNA polymerase II large subunit, at 33,256 to 36,651 _RS00160 Position (kb) 31 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 30.780 kb on - strandat 30.780 kb on - strandat 30.780 kb on - strandat 30.841 kb on - strand, within MMP_RS00145at 30.890 kb on + strand, within MMP_RS00145at 30.926 kb on + strand, within MMP_RS00145at 31.128 kb on + strand, within MMP_RS00145at 31.278 kb on + strand, within MMP_RS00145at 31.319 kb on + strand, within MMP_RS00145at 31.319 kb on + strand, within MMP_RS00145at 31.337 kb on + strand, within MMP_RS00145at 31.372 kb on - strand, within MMP_RS00145at 31.377 kb on - strand, within MMP_RS00145at 31.378 kb on + strand, within MMP_RS00145at 31.378 kb on + strand, within MMP_RS00145at 31.382 kb on + strand, within MMP_RS00145at 31.451 kb on + strand, within MMP_RS00145at 31.498 kb on + strandat 31.501 kb on - strandat 31.615 kb on + strandat 31.615 kb on + strandat 31.623 kb on - strandat 31.623 kb on - strandat 31.624 kb on + strandat 31.624 kb on + strandat 31.627 kb on - strandat 31.632 kb on - strandat 31.637 kb on - strandat 31.637 kb on - strandat 31.637 kb on - strandat 31.638 kb on + strandat 31.638 kb on + strandat 31.638 kb on + strandat 31.638 kb on + strandat 31.638 kb on + strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.640 kb on + strandat 31.640 kb on + strandat 31.641 kb on - strandat 31.642 kb on + strandat 31.642 kb on + strandat 31.642 kb on + strandat 31.643 kb on - strandat 31.644 kb on + strandat 31.658 kb on + strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.667 kb on - strandat 31.668 kb on + strandat 31.668 kb on + strandat 31.668 kb on + strandat 31.671 kb on - strandat 31.671 kb on - strandat 31.672 kb on + strandat 31.675 kb on - strandat 31.675 kb on - strandat 31.681 kb on - strandat 31.685 kb on - strandat 31.729 kb on - strandat 31.729 kb on - strandat 31.730 kb on + strandat 31.730 kb on + strandat 31.834 kb on - strandat 32.007 kb on - strand, within MMP_RS00150at 32.061 kb on + strand, within MMP_RS00150at 32.065 kb on + strand, within MMP_RS00150at 32.176 kb on - strand, within MMP_RS00150at 32.225 kb on - strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.402 kb on - strand, within MMP_RS00150at 32.474 kb on - strand, within MMP_RS00150at 32.475 kb on + strand, within MMP_RS00150at 32.860 kb on - strandat 32.909 kb on - strandat 32.918 kb on + strandat 32.947 kb on - strand, within MMP_RS00155at 32.953 kb on - strand, within MMP_RS00155at 33.015 kb on - strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.217 kb on - strandat 33.231 kb on + strandat 33.232 kb on - strandat 33.232 kb on - strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.234 kb on - strandat 33.235 kb on + strandat 33.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 50 mM hypophosphite
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30,780 - -0.4
30,780 - +1.6
30,780 - -1.2
30,841 - MMP_RS00145 0.12 -1.7
30,890 + MMP_RS00145 0.18 +0.3
30,926 + MMP_RS00145 0.22 +0.4
31,128 + MMP_RS00145 0.47 +1.5
31,278 + MMP_RS00145 0.65 -0.0
31,319 + MMP_RS00145 0.70 -0.3
31,319 + MMP_RS00145 0.70 -0.8
31,337 + MMP_RS00145 0.72 +0.4
31,372 - MMP_RS00145 0.76 +0.1
31,377 - MMP_RS00145 0.77 +1.2
31,378 + MMP_RS00145 0.77 -1.5
31,378 + MMP_RS00145 0.77 +1.6
31,382 + MMP_RS00145 0.77 -0.2
31,451 + MMP_RS00145 0.86 -0.3
31,498 + -1.6
31,501 - +0.5
31,615 + +0.8
31,615 + +1.2
31,623 - -0.1
31,623 - +1.4
31,624 + -1.5
31,624 + -1.1
31,627 - +0.3
31,632 - +1.0
31,637 - +0.7
31,637 - +0.1
31,637 - +0.3
31,638 + -0.2
31,638 + -1.2
31,638 + +0.5
31,638 + -0.9
31,638 + -0.4
31,639 - -0.8
31,639 - -0.4
31,639 - -0.7
31,639 - +0.6
31,639 - -1.8
31,640 + +0.5
31,640 + -2.0
31,641 - -0.9
31,642 + -2.1
31,642 + -0.7
31,642 + +0.3
31,643 - +0.8
31,644 + -2.0
31,658 + -0.8
31,667 - -1.2
31,667 - +1.4
31,667 - -0.7
31,667 - +1.2
31,667 - +0.6
31,667 - +1.0
31,667 - -0.0
31,668 + -1.6
31,668 + +0.1
31,668 + +0.4
31,671 - +3.4
31,671 - -0.3
31,672 + -0.8
31,675 - +1.3
31,675 - +0.5
31,681 - +1.5
31,685 - -1.0
31,729 - -3.0
31,729 - -2.8
31,730 + +0.0
31,730 + -0.3
31,834 - +0.2
32,007 - MMP_RS00150 0.23 -3.0
32,061 + MMP_RS00150 0.28 -0.8
32,065 + MMP_RS00150 0.28 -1.3
32,176 - MMP_RS00150 0.38 -2.5
32,225 - MMP_RS00150 0.43 -2.9
32,304 + MMP_RS00150 0.50 -1.2
32,304 + MMP_RS00150 0.50 -1.9
32,304 + MMP_RS00150 0.50 -1.0
32,402 - MMP_RS00150 0.59 -0.6
32,474 - MMP_RS00150 0.65 -1.3
32,475 + MMP_RS00150 0.65 -1.9
32,860 - +1.4
32,909 - +0.5
32,918 + +1.4
32,947 - MMP_RS00155 0.11 +1.3
32,953 - MMP_RS00155 0.14 +1.2
33,015 - MMP_RS00155 0.36 -0.3
33,016 + MMP_RS00155 0.37 -0.1
33,016 + MMP_RS00155 0.37 +1.0
33,016 + MMP_RS00155 0.37 +1.7
33,217 - +1.0
33,231 + +0.6
33,232 - -1.0
33,232 - +0.3
33,233 + +0.7
33,233 + +1.4
33,233 + +1.2
33,234 - +0.3
33,235 + +1.5
33,666 - +3.0

Or see this region's nucleotide sequence