Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00365

Experiment: Formate 100 mM hypophosphite

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00355 and MMP_RS00360 are separated by 36 nucleotidesMMP_RS00360 and MMP_RS00365 are separated by 94 nucleotidesMMP_RS00365 and MMP_RS00370 are separated by 391 nucleotidesMMP_RS00370 and MMP_RS00375 are separated by 26 nucleotides MMP_RS00355: MMP_RS00355 - translation initiation factor IF-6, at 74,409 to 75,092 _RS00355 MMP_RS00360: MMP_RS00360 - 50S ribosomal protein L31e, at 75,129 to 75,380 _RS00360 MMP_RS00365: MMP_RS00365 - acetylglutamate kinase, at 75,475 to 76,359 _RS00365 MMP_RS00370: MMP_RS00370 - P-II family nitrogen regulator, at 76,751 to 77,089 _RS00370 MMP_RS00375: MMP_RS00375 - ammonium transporter, at 77,116 to 78,342 _RS00375 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.688 kb on - strandat 74.763 kb on - strandat 75.135 kb on - strandat 75.783 kb on + strandat 75.962 kb on - strandat 75.968 kb on - strandat 76.097 kb on - strandat 76.350 kb on + strandat 76.402 kb on + strandat 76.413 kb on + strandat 76.418 kb on - strandat 76.469 kb on - strandat 76.470 kb on + strandat 76.475 kb on - strandat 76.475 kb on - strandat 76.479 kb on - strandat 76.496 kb on - strandat 76.497 kb on + strandat 76.497 kb on + strandat 76.551 kb on - strandat 76.552 kb on + strandat 76.571 kb on + strandat 76.634 kb on - strandat 76.635 kb on + strandat 76.636 kb on - strandat 76.636 kb on - strandat 76.636 kb on - strandat 76.637 kb on + strandat 76.768 kb on - strandat 77.037 kb on - strandat 77.076 kb on - strandat 77.193 kb on + strandat 77.201 kb on - strandat 77.204 kb on - strandat 77.205 kb on + strandat 77.292 kb on + strand, within MMP_RS00375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite
remove
74,688 - -1.1
74,763 - -0.1
75,135 - -2.2
75,783 + -0.4
75,962 - -2.6
75,968 - +0.2
76,097 - -2.0
76,350 + -2.5
76,402 + +0.9
76,413 + -0.5
76,418 - -1.2
76,469 - -0.7
76,470 + +0.4
76,475 - +0.3
76,475 - -0.2
76,479 - -0.8
76,496 - -0.7
76,497 + +0.6
76,497 + -0.4
76,551 - +0.3
76,552 + -0.4
76,571 + -0.4
76,634 - -1.0
76,635 + -1.6
76,636 - -0.7
76,636 - -1.1
76,636 - -1.8
76,637 + -0.8
76,768 - -1.0
77,037 - -1.8
77,076 - -1.7
77,193 + -0.8
77,201 - -0.5
77,204 - -0.2
77,205 + -0.2
77,292 + MMP_RS00375 0.14 -0.0

Or see this region's nucleotide sequence