Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02005

Experiment: Formate 200 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02000 and MMP_RS02005 are separated by 464 nucleotidesMMP_RS02005 and MMP_RS02010 are separated by 5 nucleotidesMMP_RS02010 and MMP_RS02015 are separated by 28 nucleotides MMP_RS02000: MMP_RS02000 - radical SAM protein, at 371,172 to 372,545 _RS02000 MMP_RS02005: MMP_RS02005 - RNA ligase, at 373,010 to 374,194 _RS02005 MMP_RS02010: MMP_RS02010 - PHP domain-containing protein, at 374,200 to 374,844 _RS02010 MMP_RS02015: MMP_RS02015 - amidohydrolase, at 374,873 to 376,156 _RS02015 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1at 372.048 kb on - strand, within MMP_RS02000at 372.232 kb on + strand, within MMP_RS02000at 372.464 kb on + strandat 372.468 kb on + strandat 372.543 kb on - strandat 372.626 kb on + strandat 372.626 kb on + strandat 372.628 kb on - strandat 372.628 kb on - strandat 372.628 kb on - strandat 372.629 kb on + strandat 372.638 kb on - strandat 372.675 kb on - strandat 372.676 kb on + strandat 372.676 kb on + strandat 372.679 kb on - strandat 372.709 kb on - strandat 372.756 kb on + strandat 372.892 kb on - strandat 372.899 kb on + strandat 372.946 kb on - strandat 372.947 kb on + strandat 372.947 kb on + strandat 372.950 kb on - strandat 372.950 kb on - strandat 372.951 kb on + strandat 372.951 kb on + strandat 372.954 kb on - strandat 372.954 kb on - strandat 372.955 kb on + strandat 372.959 kb on - strandat 372.963 kb on - strandat 372.964 kb on + strandat 372.964 kb on + strandat 372.964 kb on + strandat 372.964 kb on + strandat 372.964 kb on + strandat 372.964 kb on + strandat 372.965 kb on - strandat 372.965 kb on - strandat 372.967 kb on - strandat 372.968 kb on + strandat 372.968 kb on + strandat 372.972 kb on + strandat 372.997 kb on + strandat 373.046 kb on + strandat 373.084 kb on - strandat 373.088 kb on - strandat 373.088 kb on - strandat 373.089 kb on + strandat 373.104 kb on - strandat 373.129 kb on - strand, within MMP_RS02005at 373.155 kb on + strand, within MMP_RS02005at 373.421 kb on + strand, within MMP_RS02005at 373.421 kb on + strand, within MMP_RS02005at 373.426 kb on - strand, within MMP_RS02005at 373.427 kb on + strand, within MMP_RS02005at 373.517 kb on - strand, within MMP_RS02005at 373.535 kb on + strand, within MMP_RS02005at 373.574 kb on + strand, within MMP_RS02005at 373.574 kb on + strand, within MMP_RS02005at 373.575 kb on - strand, within MMP_RS02005at 373.692 kb on - strand, within MMP_RS02005at 373.865 kb on - strand, within MMP_RS02005at 374.061 kb on - strand, within MMP_RS02005at 374.141 kb on - strandat 374.181 kb on - strandat 374.472 kb on - strand, within MMP_RS02010at 374.474 kb on - strand, within MMP_RS02010at 374.475 kb on + strand, within MMP_RS02010at 374.476 kb on - strand, within MMP_RS02010at 374.477 kb on + strand, within MMP_RS02010at 374.485 kb on - strand, within MMP_RS02010at 374.487 kb on - strand, within MMP_RS02010at 374.492 kb on + strand, within MMP_RS02010at 374.532 kb on - strand, within MMP_RS02010at 374.576 kb on - strand, within MMP_RS02010at 374.577 kb on + strand, within MMP_RS02010at 374.599 kb on - strand, within MMP_RS02010at 374.599 kb on - strand, within MMP_RS02010at 374.698 kb on - strand, within MMP_RS02010at 374.869 kb on - strandat 374.875 kb on + strandat 374.902 kb on - strandat 374.914 kb on - strandat 374.918 kb on + strandat 374.921 kb on - strandat 374.943 kb on - strandat 374.963 kb on - strandat 374.965 kb on - strandat 374.982 kb on + strandat 375.019 kb on - strand, within MMP_RS02015at 375.038 kb on + strand, within MMP_RS02015at 375.074 kb on - strand, within MMP_RS02015at 375.077 kb on + strand, within MMP_RS02015

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 200 mM hypophosphite
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372,048 - MMP_RS02000 0.64 -0.5
372,232 + MMP_RS02000 0.77 -0.6
372,464 + +0.6
372,468 + +0.8
372,543 - +0.7
372,626 + +0.3
372,626 + +0.6
372,628 - -0.5
372,628 - -1.2
372,628 - -1.6
372,629 + -0.1
372,638 - -1.7
372,675 - -0.8
372,676 + -0.7
372,676 + -0.8
372,679 - +0.3
372,709 - -0.2
372,756 + -0.4
372,892 - -0.3
372,899 + -0.3
372,946 - -0.2
372,947 + -0.3
372,947 + -0.7
372,950 - +0.5
372,950 - -0.3
372,951 + +0.0
372,951 + -0.4
372,954 - -0.2
372,954 - +0.4
372,955 + +0.4
372,959 - +0.1
372,963 - +0.4
372,964 + +0.3
372,964 + -0.5
372,964 + -0.9
372,964 + +1.4
372,964 + -1.3
372,964 + -0.4
372,965 - +1.1
372,965 - -0.0
372,967 - -0.3
372,968 + -0.7
372,968 + -0.2
372,972 + -0.4
372,997 + -1.0
373,046 + +0.4
373,084 - +0.0
373,088 - +0.1
373,088 - +1.1
373,089 + +0.5
373,104 - -0.1
373,129 - MMP_RS02005 0.10 -0.6
373,155 + MMP_RS02005 0.12 -1.3
373,421 + MMP_RS02005 0.35 -0.7
373,421 + MMP_RS02005 0.35 -0.5
373,426 - MMP_RS02005 0.35 +1.1
373,427 + MMP_RS02005 0.35 -2.2
373,517 - MMP_RS02005 0.43 -0.2
373,535 + MMP_RS02005 0.44 -0.3
373,574 + MMP_RS02005 0.48 +0.2
373,574 + MMP_RS02005 0.48 -0.8
373,575 - MMP_RS02005 0.48 +0.1
373,692 - MMP_RS02005 0.58 +0.0
373,865 - MMP_RS02005 0.72 -0.0
374,061 - MMP_RS02005 0.89 +0.2
374,141 - +0.4
374,181 - -0.5
374,472 - MMP_RS02010 0.42 -0.9
374,474 - MMP_RS02010 0.42 +0.1
374,475 + MMP_RS02010 0.43 +0.2
374,476 - MMP_RS02010 0.43 -0.6
374,477 + MMP_RS02010 0.43 +0.1
374,485 - MMP_RS02010 0.44 -0.9
374,487 - MMP_RS02010 0.44 -0.6
374,492 + MMP_RS02010 0.45 -0.2
374,532 - MMP_RS02010 0.51 -0.4
374,576 - MMP_RS02010 0.58 -0.7
374,577 + MMP_RS02010 0.58 -1.3
374,599 - MMP_RS02010 0.62 -0.7
374,599 - MMP_RS02010 0.62 +0.2
374,698 - MMP_RS02010 0.77 -1.0
374,869 - +0.4
374,875 + +0.2
374,902 - +0.3
374,914 - -0.1
374,918 + +0.4
374,921 - -0.5
374,943 - +0.0
374,963 - +0.6
374,965 - +0.7
374,982 + -0.5
375,019 - MMP_RS02015 0.11 -0.5
375,038 + MMP_RS02015 0.13 +0.3
375,074 - MMP_RS02015 0.16 +0.0
375,077 + MMP_RS02015 0.16 -0.2

Or see this region's nucleotide sequence