Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23000

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22990 and ABZR87_RS22995 overlap by 10 nucleotidesABZR87_RS22995 and ABZR87_RS23000 overlap by 4 nucleotidesABZR87_RS23000 and ABZR87_RS23005 are separated by 52 nucleotides ABZR87_RS22990: ABZR87_RS22990 - SDR family oxidoreductase, at 1,518,039 to 1,518,800 _RS22990 ABZR87_RS22995: ABZR87_RS22995 - HAD-IIIA family hydrolase, at 1,518,791 to 1,519,459 _RS22995 ABZR87_RS23000: ABZR87_RS23000 - lipopolysaccharide heptosyltransferase II, at 1,519,456 to 1,520,673 _RS23000 ABZR87_RS23005: ABZR87_RS23005 - carbamoyltransferase C-terminal domain-containing protein, at 1,520,726 to 1,522,552 _RS23005 Position (kb) 1519 1520 1521Strain fitness (log2 ratio) -1 0 1at 1518.731 kb on - strandat 1518.878 kb on + strand, within ABZR87_RS22995at 1518.878 kb on + strand, within ABZR87_RS22995at 1518.879 kb on - strand, within ABZR87_RS22995at 1518.999 kb on - strand, within ABZR87_RS22995at 1519.083 kb on - strand, within ABZR87_RS22995at 1519.083 kb on - strand, within ABZR87_RS22995at 1519.319 kb on + strand, within ABZR87_RS22995at 1519.320 kb on - strand, within ABZR87_RS22995at 1519.320 kb on - strand, within ABZR87_RS22995at 1519.788 kb on + strand, within ABZR87_RS23000at 1520.033 kb on + strand, within ABZR87_RS23000at 1520.034 kb on - strand, within ABZR87_RS23000at 1520.034 kb on - strand, within ABZR87_RS23000at 1520.413 kb on + strand, within ABZR87_RS23000at 1520.413 kb on + strand, within ABZR87_RS23000at 1520.414 kb on - strand, within ABZR87_RS23000at 1520.576 kb on + strandat 1520.696 kb on + strandat 1520.696 kb on + strandat 1520.696 kb on + strandat 1520.697 kb on - strandat 1520.744 kb on + strandat 1520.769 kb on - strandat 1520.891 kb on + strandat 1520.958 kb on - strand, within ABZR87_RS23005at 1520.958 kb on - strand, within ABZR87_RS23005at 1521.083 kb on + strand, within ABZR87_RS23005at 1521.083 kb on + strand, within ABZR87_RS23005at 1521.083 kb on + strand, within ABZR87_RS23005at 1521.084 kb on - strand, within ABZR87_RS23005at 1521.084 kb on - strand, within ABZR87_RS23005at 1521.233 kb on + strand, within ABZR87_RS23005at 1521.291 kb on - strand, within ABZR87_RS23005at 1521.314 kb on + strand, within ABZR87_RS23005at 1521.362 kb on + strand, within ABZR87_RS23005at 1521.362 kb on + strand, within ABZR87_RS23005at 1521.363 kb on - strand, within ABZR87_RS23005at 1521.380 kb on + strand, within ABZR87_RS23005at 1521.381 kb on - strand, within ABZR87_RS23005at 1521.381 kb on - strand, within ABZR87_RS23005at 1521.410 kb on + strand, within ABZR87_RS23005at 1521.410 kb on + strand, within ABZR87_RS23005at 1521.410 kb on + strand, within ABZR87_RS23005at 1521.411 kb on - strand, within ABZR87_RS23005at 1521.411 kb on - strand, within ABZR87_RS23005at 1521.435 kb on - strand, within ABZR87_RS23005at 1521.435 kb on - strand, within ABZR87_RS23005at 1521.435 kb on - strand, within ABZR87_RS23005at 1521.435 kb on - strand, within ABZR87_RS23005at 1521.449 kb on + strand, within ABZR87_RS23005at 1521.450 kb on - strand, within ABZR87_RS23005at 1521.497 kb on + strand, within ABZR87_RS23005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,518,731 - +0.1
1,518,878 + ABZR87_RS22995 0.13 -0.4
1,518,878 + ABZR87_RS22995 0.13 +0.1
1,518,879 - ABZR87_RS22995 0.13 -0.2
1,518,999 - ABZR87_RS22995 0.31 +0.0
1,519,083 - ABZR87_RS22995 0.44 -0.9
1,519,083 - ABZR87_RS22995 0.44 -0.2
1,519,319 + ABZR87_RS22995 0.79 -0.3
1,519,320 - ABZR87_RS22995 0.79 +0.2
1,519,320 - ABZR87_RS22995 0.79 -0.3
1,519,788 + ABZR87_RS23000 0.27 -0.9
1,520,033 + ABZR87_RS23000 0.47 +0.3
1,520,034 - ABZR87_RS23000 0.47 -1.0
1,520,034 - ABZR87_RS23000 0.47 -1.4
1,520,413 + ABZR87_RS23000 0.79 -0.2
1,520,413 + ABZR87_RS23000 0.79 +0.3
1,520,414 - ABZR87_RS23000 0.79 -0.8
1,520,576 + -1.1
1,520,696 + -0.5
1,520,696 + -0.2
1,520,696 + -0.1
1,520,697 - -0.6
1,520,744 + -0.4
1,520,769 - -0.5
1,520,891 + -0.6
1,520,958 - ABZR87_RS23005 0.13 -0.8
1,520,958 - ABZR87_RS23005 0.13 +0.4
1,521,083 + ABZR87_RS23005 0.20 -0.1
1,521,083 + ABZR87_RS23005 0.20 +0.4
1,521,083 + ABZR87_RS23005 0.20 -0.4
1,521,084 - ABZR87_RS23005 0.20 +0.3
1,521,084 - ABZR87_RS23005 0.20 -0.0
1,521,233 + ABZR87_RS23005 0.28 -0.3
1,521,291 - ABZR87_RS23005 0.31 +0.1
1,521,314 + ABZR87_RS23005 0.32 +0.4
1,521,362 + ABZR87_RS23005 0.35 +0.8
1,521,362 + ABZR87_RS23005 0.35 -0.1
1,521,363 - ABZR87_RS23005 0.35 +0.1
1,521,380 + ABZR87_RS23005 0.36 -0.3
1,521,381 - ABZR87_RS23005 0.36 +0.0
1,521,381 - ABZR87_RS23005 0.36 -0.4
1,521,410 + ABZR87_RS23005 0.37 +0.9
1,521,410 + ABZR87_RS23005 0.37 -0.2
1,521,410 + ABZR87_RS23005 0.37 -0.8
1,521,411 - ABZR87_RS23005 0.37 -0.4
1,521,411 - ABZR87_RS23005 0.37 +0.4
1,521,435 - ABZR87_RS23005 0.39 -0.3
1,521,435 - ABZR87_RS23005 0.39 -0.2
1,521,435 - ABZR87_RS23005 0.39 -0.7
1,521,435 - ABZR87_RS23005 0.39 +0.1
1,521,449 + ABZR87_RS23005 0.40 +0.3
1,521,450 - ABZR87_RS23005 0.40 -0.3
1,521,497 + ABZR87_RS23005 0.42 +1.0

Or see this region's nucleotide sequence