Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22975 and ABZR87_RS22980 are separated by 137 nucleotides ABZR87_RS22980 and ABZR87_RS22985 are separated by 358 nucleotides ABZR87_RS22985 and ABZR87_RS22990 are separated by 34 nucleotides ABZR87_RS22990 and ABZR87_RS22995 overlap by 10 nucleotides
ABZR87_RS22975: ABZR87_RS22975 - ABC transporter transmembrane domain-containing protein, at 1,512,842 to 1,515,760
_RS22975
ABZR87_RS22980: ABZR87_RS22980 - hypothetical protein, at 1,515,898 to 1,516,332
_RS22980
ABZR87_RS22985: ABZR87_RS22985 - glycosyltransferase family 1 protein, at 1,516,691 to 1,518,004
_RS22985
ABZR87_RS22990: ABZR87_RS22990 - SDR family oxidoreductase, at 1,518,039 to 1,518,800
_RS22990
ABZR87_RS22995: ABZR87_RS22995 - HAD-IIIA family hydrolase, at 1,518,791 to 1,519,459
_RS22995
Position (kb)
1516
1517
1518
1519 Strain fitness (log2 ratio)
-1
0
1
2 at 1515.758 kb on + strand at 1515.758 kb on + strand at 1515.758 kb on + strand at 1515.852 kb on + strand at 1515.852 kb on + strand at 1515.852 kb on + strand at 1515.853 kb on - strand at 1515.853 kb on - strand at 1516.028 kb on - strand, within ABZR87_RS22980 at 1516.033 kb on + strand, within ABZR87_RS22980 at 1516.078 kb on + strand, within ABZR87_RS22980 at 1516.237 kb on + strand, within ABZR87_RS22980 at 1516.414 kb on + strand at 1516.414 kb on + strand at 1516.414 kb on + strand at 1516.414 kb on + strand at 1516.415 kb on - strand at 1516.415 kb on - strand at 1516.592 kb on - strand at 1516.675 kb on + strand at 1516.770 kb on + strand at 1517.243 kb on + strand, within ABZR87_RS22985 at 1517.463 kb on - strand, within ABZR87_RS22985 at 1517.463 kb on - strand, within ABZR87_RS22985 at 1517.694 kb on + strand, within ABZR87_RS22985 at 1517.867 kb on + strand, within ABZR87_RS22985 at 1517.867 kb on + strand, within ABZR87_RS22985 at 1517.868 kb on - strand, within ABZR87_RS22985 at 1517.906 kb on + strand at 1518.731 kb on - strand at 1518.878 kb on + strand, within ABZR87_RS22995 at 1518.878 kb on + strand, within ABZR87_RS22995 at 1518.879 kb on - strand, within ABZR87_RS22995 at 1518.999 kb on - strand, within ABZR87_RS22995
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,515,758 + -1.1 1,515,758 + +0.0 1,515,758 + -0.9 1,515,852 + -0.2 1,515,852 + -0.6 1,515,852 + -1.2 1,515,853 - +0.0 1,515,853 - +2.0 1,516,028 - ABZR87_RS22980 0.30 -0.6 1,516,033 + ABZR87_RS22980 0.31 +0.2 1,516,078 + ABZR87_RS22980 0.41 -0.4 1,516,237 + ABZR87_RS22980 0.78 +0.1 1,516,414 + -0.9 1,516,414 + -0.5 1,516,414 + -0.7 1,516,414 + -0.5 1,516,415 - -0.5 1,516,415 - +0.4 1,516,592 - +0.3 1,516,675 + -0.7 1,516,770 + -0.1 1,517,243 + ABZR87_RS22985 0.42 +0.0 1,517,463 - ABZR87_RS22985 0.59 -0.5 1,517,463 - ABZR87_RS22985 0.59 +0.4 1,517,694 + ABZR87_RS22985 0.76 +0.6 1,517,867 + ABZR87_RS22985 0.89 -0.9 1,517,867 + ABZR87_RS22985 0.89 -0.6 1,517,868 - ABZR87_RS22985 0.90 +0.1 1,517,906 + -0.8 1,518,731 - +0.1 1,518,878 + ABZR87_RS22995 0.13 -0.4 1,518,878 + ABZR87_RS22995 0.13 +0.1 1,518,879 - ABZR87_RS22995 0.13 -0.2 1,518,999 - ABZR87_RS22995 0.31 +0.0
Or see this region's nucleotide sequence