Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22985

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22975 and ABZR87_RS22980 are separated by 137 nucleotidesABZR87_RS22980 and ABZR87_RS22985 are separated by 358 nucleotidesABZR87_RS22985 and ABZR87_RS22990 are separated by 34 nucleotidesABZR87_RS22990 and ABZR87_RS22995 overlap by 10 nucleotides ABZR87_RS22975: ABZR87_RS22975 - ABC transporter transmembrane domain-containing protein, at 1,512,842 to 1,515,760 _RS22975 ABZR87_RS22980: ABZR87_RS22980 - hypothetical protein, at 1,515,898 to 1,516,332 _RS22980 ABZR87_RS22985: ABZR87_RS22985 - glycosyltransferase family 1 protein, at 1,516,691 to 1,518,004 _RS22985 ABZR87_RS22990: ABZR87_RS22990 - SDR family oxidoreductase, at 1,518,039 to 1,518,800 _RS22990 ABZR87_RS22995: ABZR87_RS22995 - HAD-IIIA family hydrolase, at 1,518,791 to 1,519,459 _RS22995 Position (kb) 1516 1517 1518 1519Strain fitness (log2 ratio) -1 0 1 2at 1515.758 kb on + strandat 1515.758 kb on + strandat 1515.758 kb on + strandat 1515.852 kb on + strandat 1515.852 kb on + strandat 1515.852 kb on + strandat 1515.853 kb on - strandat 1515.853 kb on - strandat 1516.028 kb on - strand, within ABZR87_RS22980at 1516.033 kb on + strand, within ABZR87_RS22980at 1516.078 kb on + strand, within ABZR87_RS22980at 1516.237 kb on + strand, within ABZR87_RS22980at 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.414 kb on + strandat 1516.415 kb on - strandat 1516.415 kb on - strandat 1516.592 kb on - strandat 1516.675 kb on + strandat 1516.770 kb on + strandat 1517.243 kb on + strand, within ABZR87_RS22985at 1517.463 kb on - strand, within ABZR87_RS22985at 1517.463 kb on - strand, within ABZR87_RS22985at 1517.694 kb on + strand, within ABZR87_RS22985at 1517.867 kb on + strand, within ABZR87_RS22985at 1517.867 kb on + strand, within ABZR87_RS22985at 1517.868 kb on - strand, within ABZR87_RS22985at 1517.906 kb on + strandat 1518.731 kb on - strandat 1518.878 kb on + strand, within ABZR87_RS22995at 1518.878 kb on + strand, within ABZR87_RS22995at 1518.879 kb on - strand, within ABZR87_RS22995at 1518.999 kb on - strand, within ABZR87_RS22995

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,515,758 + -1.1
1,515,758 + +0.0
1,515,758 + -0.9
1,515,852 + -0.2
1,515,852 + -0.6
1,515,852 + -1.2
1,515,853 - +0.0
1,515,853 - +2.0
1,516,028 - ABZR87_RS22980 0.30 -0.6
1,516,033 + ABZR87_RS22980 0.31 +0.2
1,516,078 + ABZR87_RS22980 0.41 -0.4
1,516,237 + ABZR87_RS22980 0.78 +0.1
1,516,414 + -0.9
1,516,414 + -0.5
1,516,414 + -0.7
1,516,414 + -0.5
1,516,415 - -0.5
1,516,415 - +0.4
1,516,592 - +0.3
1,516,675 + -0.7
1,516,770 + -0.1
1,517,243 + ABZR87_RS22985 0.42 +0.0
1,517,463 - ABZR87_RS22985 0.59 -0.5
1,517,463 - ABZR87_RS22985 0.59 +0.4
1,517,694 + ABZR87_RS22985 0.76 +0.6
1,517,867 + ABZR87_RS22985 0.89 -0.9
1,517,867 + ABZR87_RS22985 0.89 -0.6
1,517,868 - ABZR87_RS22985 0.90 +0.1
1,517,906 + -0.8
1,518,731 - +0.1
1,518,878 + ABZR87_RS22995 0.13 -0.4
1,518,878 + ABZR87_RS22995 0.13 +0.1
1,518,879 - ABZR87_RS22995 0.13 -0.2
1,518,999 - ABZR87_RS22995 0.31 +0.0

Or see this region's nucleotide sequence