Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00010

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00005 and ABZR87_RS00010 are separated by 95 nucleotidesABZR87_RS00010 and ABZR87_RS00015 are separated by 2 nucleotides ABZR87_RS00005: ABZR87_RS00005 - hypothetical protein, at 524 to 1,066 _RS00005 ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076 _RS00010 ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 Position (kb) 1 2 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 0.566 kb on - strandat 0.661 kb on + strand, within ABZR87_RS00005at 0.835 kb on - strand, within ABZR87_RS00005at 1.128 kb on + strandat 1.128 kb on + strandat 1.163 kb on + strandat 1.164 kb on - strandat 1.289 kb on + strandat 1.289 kb on + strandat 1.290 kb on - strandat 1.359 kb on + strandat 1.359 kb on + strandat 1.360 kb on - strandat 1.490 kb on + strandat 1.491 kb on - strandat 1.585 kb on + strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.608 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.707 kb on - strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 2.276 kb on + strand, within ABZR87_RS00010at 2.276 kb on + strand, within ABZR87_RS00010at 2.277 kb on - strand, within ABZR87_RS00010at 2.277 kb on - strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.648 kb on - strand, within ABZR87_RS00010at 2.648 kb on - strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.525 kb on - strand, within ABZR87_RS00010at 4.107 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.318 kb on - strand, within ABZR87_RS00010at 4.701 kb on - strandat 4.701 kb on - strandat 4.701 kb on - strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.949 kb on - strandat 5.013 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.135 kb on - strandat 5.288 kb on - strand, within ABZR87_RS00015at 5.466 kb on + strand, within ABZR87_RS00015at 5.467 kb on - strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.515 kb on + strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.699 kb on - strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.765 kb on - strand, within ABZR87_RS00015at 5.812 kb on + strand, within ABZR87_RS00015at 5.820 kb on - strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.835 kb on - strand, within ABZR87_RS00015at 5.978 kb on - strand, within ABZR87_RS00015

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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566 - -1.1
661 + ABZR87_RS00005 0.25 -0.4
835 - ABZR87_RS00005 0.57 -0.7
1,128 + -0.4
1,128 + +0.0
1,163 + +0.1
1,164 - -0.7
1,289 + -0.0
1,289 + -0.0
1,290 - +0.5
1,359 + -0.3
1,359 + -0.3
1,360 - +0.1
1,490 + -0.1
1,491 - -0.0
1,585 + ABZR87_RS00010 0.11 +0.1
1,586 - ABZR87_RS00010 0.11 -0.2
1,586 - ABZR87_RS00010 0.11 -0.3
1,586 - ABZR87_RS00010 0.11 +0.3
1,586 - ABZR87_RS00010 0.11 +0.9
1,586 - ABZR87_RS00010 0.11 -0.6
1,608 + ABZR87_RS00010 0.11 -0.6
1,706 + ABZR87_RS00010 0.14 -0.3
1,706 + ABZR87_RS00010 0.14 -0.0
1,707 - ABZR87_RS00010 0.14 +0.2
1,727 + ABZR87_RS00010 0.14 -0.7
1,727 + ABZR87_RS00010 0.14 +0.8
1,727 + ABZR87_RS00010 0.14 +0.8
1,728 - ABZR87_RS00010 0.14 -0.5
1,728 - ABZR87_RS00010 0.14 -0.2
1,728 - ABZR87_RS00010 0.14 +0.2
1,728 - ABZR87_RS00010 0.14 -0.1
2,276 + ABZR87_RS00010 0.28 +1.5
2,276 + ABZR87_RS00010 0.28 +0.2
2,277 - ABZR87_RS00010 0.28 -0.8
2,277 - ABZR87_RS00010 0.28 -1.0
2,647 + ABZR87_RS00010 0.38 -0.5
2,647 + ABZR87_RS00010 0.38 +0.0
2,647 + ABZR87_RS00010 0.38 -0.1
2,648 - ABZR87_RS00010 0.38 +0.6
2,648 - ABZR87_RS00010 0.38 -0.9
3,251 + ABZR87_RS00010 0.53 -0.1
3,251 + ABZR87_RS00010 0.53 -0.5
3,251 + ABZR87_RS00010 0.53 -0.4
3,525 - ABZR87_RS00010 0.60 +0.3
4,107 + ABZR87_RS00010 0.75 -1.0
4,317 + ABZR87_RS00010 0.81 +0.0
4,317 + ABZR87_RS00010 0.81 +0.4
4,318 - ABZR87_RS00010 0.81 -0.5
4,701 - +0.9
4,701 - -0.0
4,701 - -0.1
4,850 + -0.3
4,850 + -1.2
4,850 + -1.3
4,850 + -0.3
4,850 + +0.1
4,850 + -0.5
4,850 + -0.2
4,851 - +0.2
4,851 - -1.1
4,851 - -0.2
4,851 - -1.2
4,851 - -0.1
4,949 - -2.2
5,013 + +0.4
5,134 + -0.6
5,134 + +0.4
5,134 + -0.1
5,134 + -0.2
5,135 - -1.1
5,288 - ABZR87_RS00015 0.12 -0.2
5,466 + ABZR87_RS00015 0.22 -0.3
5,467 - ABZR87_RS00015 0.22 +0.5
5,513 + ABZR87_RS00015 0.24 -0.3
5,513 + ABZR87_RS00015 0.24 +0.9
5,515 + ABZR87_RS00015 0.24 +0.3
5,516 - ABZR87_RS00015 0.24 +0.6
5,516 - ABZR87_RS00015 0.24 -1.0
5,695 + ABZR87_RS00015 0.34 -1.1
5,695 + ABZR87_RS00015 0.34 -0.3
5,698 + ABZR87_RS00015 0.35 -0.5
5,698 + ABZR87_RS00015 0.35 +0.1
5,699 - ABZR87_RS00015 0.35 -0.5
5,725 + ABZR87_RS00015 0.36 -1.3
5,725 + ABZR87_RS00015 0.36 +0.4
5,725 + ABZR87_RS00015 0.36 -0.3
5,725 + ABZR87_RS00015 0.36 -0.2
5,725 + ABZR87_RS00015 0.36 -0.3
5,725 + ABZR87_RS00015 0.36 +0.3
5,725 + ABZR87_RS00015 0.36 -0.2
5,725 + ABZR87_RS00015 0.36 -0.1
5,725 + ABZR87_RS00015 0.36 -0.2
5,725 + ABZR87_RS00015 0.36 -0.5
5,725 + ABZR87_RS00015 0.36 +0.4
5,726 - ABZR87_RS00015 0.36 -0.1
5,726 - ABZR87_RS00015 0.36 -0.4
5,726 - ABZR87_RS00015 0.36 +0.2
5,726 - ABZR87_RS00015 0.36 +0.1
5,726 - ABZR87_RS00015 0.36 +0.1
5,726 - ABZR87_RS00015 0.36 -0.8
5,726 - ABZR87_RS00015 0.36 -0.4
5,726 - ABZR87_RS00015 0.36 -0.2
5,726 - ABZR87_RS00015 0.36 -1.9
5,726 - ABZR87_RS00015 0.36 -0.3
5,726 - ABZR87_RS00015 0.36 -0.1
5,764 + ABZR87_RS00015 0.38 +0.5
5,764 + ABZR87_RS00015 0.38 +0.1
5,765 - ABZR87_RS00015 0.38 +0.3
5,812 + ABZR87_RS00015 0.41 -0.3
5,820 - ABZR87_RS00015 0.41 -0.2
5,827 + ABZR87_RS00015 0.42 -0.0
5,827 + ABZR87_RS00015 0.42 +0.5
5,827 + ABZR87_RS00015 0.42 -0.0
5,827 + ABZR87_RS00015 0.42 -0.3
5,827 + ABZR87_RS00015 0.42 +0.1
5,828 - ABZR87_RS00015 0.42 -0.1
5,828 - ABZR87_RS00015 0.42 -0.4
5,828 - ABZR87_RS00015 0.42 +0.2
5,828 - ABZR87_RS00015 0.42 -0.0
5,835 - ABZR87_RS00015 0.42 -1.8
5,978 - ABZR87_RS00015 0.50 -0.3

Or see this region's nucleotide sequence