Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23330

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23315 and ABZR87_RS23320 are separated by 55 nucleotidesABZR87_RS23320 and ABZR87_RS23325 are separated by 47 nucleotidesABZR87_RS23325 and ABZR87_RS23330 are separated by 4 nucleotidesABZR87_RS23330 and ABZR87_RS23335 are separated by 88 nucleotides ABZR87_RS23315: ABZR87_RS23315 - MarR family transcriptional regulator, at 1,596,131 to 1,596,547 _RS23315 ABZR87_RS23320: ABZR87_RS23320 - 4-oxalocrotonate tautomerase family protein, at 1,596,603 to 1,596,995 _RS23320 ABZR87_RS23325: ABZR87_RS23325 - hypothetical protein, at 1,597,043 to 1,597,177 _RS23325 ABZR87_RS23330: ABZR87_RS23330 - helix-turn-helix domain-containing protein, at 1,597,182 to 1,598,201 _RS23330 ABZR87_RS23335: ABZR87_RS23335 - acyl-CoA dehydrogenase family protein, at 1,598,290 to 1,599,432 _RS23335 Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1596.490 kb on + strand, within ABZR87_RS23315at 1596.506 kb on - strandat 1596.506 kb on - strandat 1596.536 kb on - strandat 1596.735 kb on + strand, within ABZR87_RS23320at 1596.735 kb on + strand, within ABZR87_RS23320at 1596.736 kb on - strand, within ABZR87_RS23320at 1596.736 kb on - strand, within ABZR87_RS23320at 1596.736 kb on - strand, within ABZR87_RS23320at 1596.736 kb on - strand, within ABZR87_RS23320at 1596.736 kb on - strand, within ABZR87_RS23320at 1596.802 kb on - strand, within ABZR87_RS23320at 1596.834 kb on - strand, within ABZR87_RS23320at 1596.855 kb on + strand, within ABZR87_RS23320at 1596.855 kb on + strand, within ABZR87_RS23320at 1596.855 kb on + strand, within ABZR87_RS23320at 1596.855 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.915 kb on + strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.916 kb on - strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.917 kb on + strand, within ABZR87_RS23320at 1596.918 kb on - strand, within ABZR87_RS23320at 1596.918 kb on - strand, within ABZR87_RS23320at 1596.918 kb on - strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.921 kb on + strand, within ABZR87_RS23320at 1596.922 kb on - strand, within ABZR87_RS23320at 1596.922 kb on - strand, within ABZR87_RS23320at 1596.922 kb on - strand, within ABZR87_RS23320at 1596.922 kb on - strand, within ABZR87_RS23320at 1596.948 kb on + strand, within ABZR87_RS23320at 1596.948 kb on + strand, within ABZR87_RS23320at 1596.949 kb on - strand, within ABZR87_RS23320at 1596.975 kb on + strandat 1596.975 kb on + strandat 1596.976 kb on - strandat 1596.976 kb on - strandat 1596.976 kb on - strandat 1596.993 kb on + strandat 1596.994 kb on - strandat 1596.994 kb on - strandat 1597.097 kb on + strand, within ABZR87_RS23325at 1597.098 kb on - strand, within ABZR87_RS23325at 1597.098 kb on - strand, within ABZR87_RS23325at 1597.357 kb on + strand, within ABZR87_RS23330at 1597.358 kb on - strand, within ABZR87_RS23330at 1597.358 kb on - strand, within ABZR87_RS23330at 1597.358 kb on - strand, within ABZR87_RS23330at 1597.358 kb on - strand, within ABZR87_RS23330at 1597.534 kb on - strand, within ABZR87_RS23330at 1597.549 kb on + strand, within ABZR87_RS23330at 1597.549 kb on + strand, within ABZR87_RS23330at 1597.550 kb on - strand, within ABZR87_RS23330at 1597.550 kb on - strand, within ABZR87_RS23330at 1597.627 kb on + strand, within ABZR87_RS23330at 1597.627 kb on + strand, within ABZR87_RS23330at 1597.627 kb on + strand, within ABZR87_RS23330at 1597.628 kb on - strand, within ABZR87_RS23330at 1597.628 kb on - strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.708 kb on + strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.709 kb on - strand, within ABZR87_RS23330at 1597.769 kb on + strand, within ABZR87_RS23330at 1597.769 kb on + strand, within ABZR87_RS23330at 1597.769 kb on + strand, within ABZR87_RS23330at 1597.769 kb on + strand, within ABZR87_RS23330at 1597.770 kb on - strand, within ABZR87_RS23330at 1597.770 kb on - strand, within ABZR87_RS23330at 1597.770 kb on - strand, within ABZR87_RS23330at 1597.843 kb on + strand, within ABZR87_RS23330at 1597.934 kb on - strand, within ABZR87_RS23330at 1597.934 kb on - strand, within ABZR87_RS23330at 1597.934 kb on - strand, within ABZR87_RS23330at 1597.934 kb on - strand, within ABZR87_RS23330at 1597.974 kb on - strand, within ABZR87_RS23330at 1598.107 kb on + strandat 1598.107 kb on + strandat 1598.108 kb on - strandat 1598.108 kb on - strandat 1598.108 kb on - strandat 1598.108 kb on - strandat 1598.201 kb on + strandat 1598.207 kb on + strandat 1598.254 kb on + strandat 1598.254 kb on + strandat 1598.255 kb on - strandat 1598.255 kb on - strandat 1598.352 kb on + strandat 1598.401 kb on + strandat 1598.401 kb on + strandat 1598.444 kb on - strand, within ABZR87_RS23335at 1598.498 kb on - strand, within ABZR87_RS23335at 1598.581 kb on + strand, within ABZR87_RS23335at 1598.581 kb on + strand, within ABZR87_RS23335at 1598.581 kb on + strand, within ABZR87_RS23335at 1598.582 kb on - strand, within ABZR87_RS23335at 1598.620 kb on + strand, within ABZR87_RS23335at 1598.620 kb on + strand, within ABZR87_RS23335at 1598.621 kb on - strand, within ABZR87_RS23335at 1598.740 kb on + strand, within ABZR87_RS23335at 1598.740 kb on + strand, within ABZR87_RS23335at 1598.740 kb on + strand, within ABZR87_RS23335at 1598.741 kb on - strand, within ABZR87_RS23335at 1598.741 kb on - strand, within ABZR87_RS23335at 1598.741 kb on - strand, within ABZR87_RS23335at 1598.812 kb on - strand, within ABZR87_RS23335at 1599.088 kb on + strand, within ABZR87_RS23335at 1599.088 kb on + strand, within ABZR87_RS23335at 1599.089 kb on - strand, within ABZR87_RS23335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,596,490 + ABZR87_RS23315 0.86 +0.1
1,596,506 - +0.0
1,596,506 - -0.3
1,596,536 - -1.1
1,596,735 + ABZR87_RS23320 0.34 -0.4
1,596,735 + ABZR87_RS23320 0.34 -0.4
1,596,736 - ABZR87_RS23320 0.34 +0.0
1,596,736 - ABZR87_RS23320 0.34 -1.1
1,596,736 - ABZR87_RS23320 0.34 +0.5
1,596,736 - ABZR87_RS23320 0.34 +0.1
1,596,736 - ABZR87_RS23320 0.34 +0.0
1,596,802 - ABZR87_RS23320 0.51 -0.8
1,596,834 - ABZR87_RS23320 0.59 +0.7
1,596,855 + ABZR87_RS23320 0.64 -0.5
1,596,855 + ABZR87_RS23320 0.64 +2.9
1,596,855 + ABZR87_RS23320 0.64 +0.3
1,596,855 + ABZR87_RS23320 0.64 +0.1
1,596,915 + ABZR87_RS23320 0.79 +0.1
1,596,915 + ABZR87_RS23320 0.79 +0.1
1,596,915 + ABZR87_RS23320 0.79 -0.5
1,596,915 + ABZR87_RS23320 0.79 +0.3
1,596,915 + ABZR87_RS23320 0.79 -0.1
1,596,915 + ABZR87_RS23320 0.79 +0.0
1,596,915 + ABZR87_RS23320 0.79 +0.0
1,596,915 + ABZR87_RS23320 0.79 +0.5
1,596,915 + ABZR87_RS23320 0.79 -0.5
1,596,915 + ABZR87_RS23320 0.79 -0.2
1,596,915 + ABZR87_RS23320 0.79 +0.5
1,596,915 + ABZR87_RS23320 0.79 +0.0
1,596,915 + ABZR87_RS23320 0.79 -0.0
1,596,915 + ABZR87_RS23320 0.79 +0.2
1,596,915 + ABZR87_RS23320 0.79 -0.1
1,596,915 + ABZR87_RS23320 0.79 -1.2
1,596,915 + ABZR87_RS23320 0.79 -1.1
1,596,915 + ABZR87_RS23320 0.79 -0.6
1,596,915 + ABZR87_RS23320 0.79 +0.1
1,596,915 + ABZR87_RS23320 0.79 -0.2
1,596,915 + ABZR87_RS23320 0.79 -1.2
1,596,915 + ABZR87_RS23320 0.79 -0.5
1,596,915 + ABZR87_RS23320 0.79 -0.9
1,596,915 + ABZR87_RS23320 0.79 +0.1
1,596,916 - ABZR87_RS23320 0.80 +0.3
1,596,916 - ABZR87_RS23320 0.80 -1.5
1,596,916 - ABZR87_RS23320 0.80 -0.3
1,596,916 - ABZR87_RS23320 0.80 +0.0
1,596,916 - ABZR87_RS23320 0.80 -0.1
1,596,916 - ABZR87_RS23320 0.80 +0.4
1,596,916 - ABZR87_RS23320 0.80 +0.2
1,596,916 - ABZR87_RS23320 0.80 -0.1
1,596,916 - ABZR87_RS23320 0.80 +0.5
1,596,916 - ABZR87_RS23320 0.80 -0.2
1,596,917 + ABZR87_RS23320 0.80 -0.0
1,596,917 + ABZR87_RS23320 0.80 +0.2
1,596,917 + ABZR87_RS23320 0.80 -0.5
1,596,917 + ABZR87_RS23320 0.80 -0.8
1,596,917 + ABZR87_RS23320 0.80 -0.4
1,596,917 + ABZR87_RS23320 0.80 +0.2
1,596,917 + ABZR87_RS23320 0.80 +0.6
1,596,917 + ABZR87_RS23320 0.80 +0.4
1,596,917 + ABZR87_RS23320 0.80 -0.0
1,596,917 + ABZR87_RS23320 0.80 +0.0
1,596,917 + ABZR87_RS23320 0.80 +0.2
1,596,917 + ABZR87_RS23320 0.80 +1.1
1,596,918 - ABZR87_RS23320 0.80 -0.6
1,596,918 - ABZR87_RS23320 0.80 -0.3
1,596,918 - ABZR87_RS23320 0.80 -0.4
1,596,921 + ABZR87_RS23320 0.81 -0.9
1,596,921 + ABZR87_RS23320 0.81 -0.9
1,596,921 + ABZR87_RS23320 0.81 -0.9
1,596,921 + ABZR87_RS23320 0.81 +0.5
1,596,921 + ABZR87_RS23320 0.81 +0.3
1,596,921 + ABZR87_RS23320 0.81 +0.3
1,596,921 + ABZR87_RS23320 0.81 -0.2
1,596,922 - ABZR87_RS23320 0.81 +0.2
1,596,922 - ABZR87_RS23320 0.81 -0.4
1,596,922 - ABZR87_RS23320 0.81 +0.6
1,596,922 - ABZR87_RS23320 0.81 +0.3
1,596,948 + ABZR87_RS23320 0.88 +0.4
1,596,948 + ABZR87_RS23320 0.88 +0.0
1,596,949 - ABZR87_RS23320 0.88 +0.3
1,596,975 + -0.1
1,596,975 + -1.4
1,596,976 - -0.4
1,596,976 - -0.5
1,596,976 - -0.0
1,596,993 + -0.7
1,596,994 - +0.1
1,596,994 - -0.4
1,597,097 + ABZR87_RS23325 0.40 -0.2
1,597,098 - ABZR87_RS23325 0.41 +0.3
1,597,098 - ABZR87_RS23325 0.41 -0.5
1,597,357 + ABZR87_RS23330 0.17 -0.7
1,597,358 - ABZR87_RS23330 0.17 +1.3
1,597,358 - ABZR87_RS23330 0.17 +0.3
1,597,358 - ABZR87_RS23330 0.17 +0.7
1,597,358 - ABZR87_RS23330 0.17 +0.4
1,597,534 - ABZR87_RS23330 0.35 +0.2
1,597,549 + ABZR87_RS23330 0.36 -2.2
1,597,549 + ABZR87_RS23330 0.36 -0.1
1,597,550 - ABZR87_RS23330 0.36 +0.2
1,597,550 - ABZR87_RS23330 0.36 -0.9
1,597,627 + ABZR87_RS23330 0.44 +0.6
1,597,627 + ABZR87_RS23330 0.44 +0.0
1,597,627 + ABZR87_RS23330 0.44 -0.3
1,597,628 - ABZR87_RS23330 0.44 +0.8
1,597,628 - ABZR87_RS23330 0.44 +0.5
1,597,708 + ABZR87_RS23330 0.52 +0.4
1,597,708 + ABZR87_RS23330 0.52 -0.0
1,597,708 + ABZR87_RS23330 0.52 +0.0
1,597,708 + ABZR87_RS23330 0.52 +0.6
1,597,708 + ABZR87_RS23330 0.52 +0.0
1,597,708 + ABZR87_RS23330 0.52 +0.1
1,597,708 + ABZR87_RS23330 0.52 -0.5
1,597,709 - ABZR87_RS23330 0.52 -0.0
1,597,709 - ABZR87_RS23330 0.52 -0.3
1,597,709 - ABZR87_RS23330 0.52 +0.1
1,597,709 - ABZR87_RS23330 0.52 -0.2
1,597,709 - ABZR87_RS23330 0.52 +0.3
1,597,709 - ABZR87_RS23330 0.52 -0.3
1,597,769 + ABZR87_RS23330 0.58 -0.3
1,597,769 + ABZR87_RS23330 0.58 +0.1
1,597,769 + ABZR87_RS23330 0.58 -0.7
1,597,769 + ABZR87_RS23330 0.58 -0.4
1,597,770 - ABZR87_RS23330 0.58 +0.7
1,597,770 - ABZR87_RS23330 0.58 -2.2
1,597,770 - ABZR87_RS23330 0.58 +0.2
1,597,843 + ABZR87_RS23330 0.65 -0.0
1,597,934 - ABZR87_RS23330 0.74 -0.8
1,597,934 - ABZR87_RS23330 0.74 -0.6
1,597,934 - ABZR87_RS23330 0.74 -0.2
1,597,934 - ABZR87_RS23330 0.74 +0.2
1,597,974 - ABZR87_RS23330 0.78 +0.4
1,598,107 + +0.1
1,598,107 + +0.2
1,598,108 - +0.2
1,598,108 - +0.5
1,598,108 - +0.4
1,598,108 - +0.1
1,598,201 + -0.5
1,598,207 + -1.0
1,598,254 + -0.0
1,598,254 + -0.2
1,598,255 - +1.9
1,598,255 - -0.6
1,598,352 + +0.2
1,598,401 + +0.2
1,598,401 + +1.7
1,598,444 - ABZR87_RS23335 0.13 -0.5
1,598,498 - ABZR87_RS23335 0.18 +0.2
1,598,581 + ABZR87_RS23335 0.25 +0.3
1,598,581 + ABZR87_RS23335 0.25 -0.2
1,598,581 + ABZR87_RS23335 0.25 +0.6
1,598,582 - ABZR87_RS23335 0.26 +0.0
1,598,620 + ABZR87_RS23335 0.29 +0.1
1,598,620 + ABZR87_RS23335 0.29 -0.1
1,598,621 - ABZR87_RS23335 0.29 -0.2
1,598,740 + ABZR87_RS23335 0.39 +1.2
1,598,740 + ABZR87_RS23335 0.39 -0.3
1,598,740 + ABZR87_RS23335 0.39 -0.1
1,598,741 - ABZR87_RS23335 0.39 +0.2
1,598,741 - ABZR87_RS23335 0.39 -0.0
1,598,741 - ABZR87_RS23335 0.39 -0.4
1,598,812 - ABZR87_RS23335 0.46 -0.2
1,599,088 + ABZR87_RS23335 0.70 +0.4
1,599,088 + ABZR87_RS23335 0.70 -0.7
1,599,089 - ABZR87_RS23335 0.70 +0.2

Or see this region's nucleotide sequence